RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 SLC25A38Q96DW6 304 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 ELOVL5Q9NYP7 299 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 ADAMTSL1Q8N6G6 1762 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 A0A1B0GW15 77 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 CELA3BP08861 270 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 HBBP68871 147 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 SP7Q8TDD2 431 aaPredicted RBP10.68□□□□□ -0.7
SDC3-201ENST00000336798 ARPC1AQ92747 370 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 LYNX1G3V0Z9 82 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 CECR9P0C854 216 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 LYNX1P0DP58 116 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 ZCCHC24Q8N2G6 241 aaKnown RBP10.68□□□□□ -0.7
SDC3-201ENST00000336798 TDRD6O60522 2096 aaKnown RBP10.68□□□□□ -0.7
SDC3-201ENST00000336798 DLEU1O43261 78 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 MEF2CQ06413 473 aaPredicted RBP10.68□□□□□ -0.7
SDC3-201ENST00000336798 LY6DQ14210 128 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 ACP7Q6ZNF0 438 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 OR11H12B2RN74 326 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 VDAC2P45880 294 aaPredicted RBP10.68□□□□□ -0.7
SDC3-201ENST00000336798 OR11H1Q8NG94 326 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 OR11H2Q8NH07 326 aa10.68□□□□□ -0.7
SDC3-201ENST00000336798 A0A0U1RRA0 63 aa10.67□□□□□ -0.7
SDC3-201ENST00000336798 IGHV4-39P01824 125 aa10.67□□□□□ -0.7
SDC3-201ENST00000336798 CNTFRP26992 372 aa10.67□□□□□ -0.7
SDC3-201ENST00000336798 NCOR1P1Q9H4R4 102 aa10.67□□□□□ -0.7
SDC3-201ENST00000336798 MRPS18AQ9NVS2 196 aaKnown RBP10.67□□□□□ -0.7
SDC3-201ENST00000336798 CCDC88CQ9P219 2028 aa10.67□□□□□ -0.7
SDC3-201ENST00000336798 SCO2A0A1W2PP80 73 aa10.67□□□□□ -0.7
SDC3-201ENST00000336798 MRPL20Q9BYC9 149 aaKnown RBP10.67□□□□□ -0.7
SDC3-201ENST00000336798 TMEM54Q969K7 222 aa10.67□□□□□ -0.7
SDC3-201ENST00000336798 A0A1B0GWB2 263 aa10.67□□□□□ -0.7
SDC3-201ENST00000336798 EFEMP2O95967 443 aa10.67□□□□□ -0.7
SDC3-201ENST00000336798 C1QL2Q7Z5L3 287 aa10.67□□□□□ -0.7
SDC3-201ENST00000336798 KIR3DL3Q8N743 410 aa10.67□□□□□ -0.7
SDC3-201ENST00000336798 LINC00527Q9UJ94 153 aa10.67□□□□□ -0.7
SDC3-201ENST00000336798 IGKV1D-42A0A075B6H8 117 aa10.67□□□□□ -0.7
SDC3-201ENST00000336798 CD7P09564 240 aa10.67□□□□□ -0.7
SDC3-201ENST00000336798 OR10W1Q8NGF6 305 aa10.67□□□□□ -0.7
SDC3-201ENST00000336798 MRPL32Q9BYC8 188 aaKnown RBP10.67□□□□□ -0.7
SDC3-201ENST00000336798 PPP1R3EQ9H7J1 279 aa10.67□□□□□ -0.7
SDC3-201ENST00000336798 SCN2AQ99250 2005 aa10.67□□□□□ -0.7
SDC3-201ENST00000336798 ABCA3Q99758 1704 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 PIN1P1O15428 100 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 Q6ZT83 130 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 C17orf98A8MV24 154 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 NBEAP1P0C6P0 100 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 STAG3L3P0CL85 134 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 H2BFSP57053 126 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 OR13A1Q8NGR1 328 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 ZNF703Q9H7S9 590 aaPredicted RBP10.66□□□□□ -0.7
SDC3-201ENST00000336798 GP6Q9HCN6 339 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 DPM3Q9P2X0 92 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 IGHV3-64A0A075B6Q5 118 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 GNG5P63218 68 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 CD33P20138 364 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 HOXA5P20719 270 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 OR5A1Q8NGJ0 315 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 MSGN1A6NI15 193 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 H7C1H1 209 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 PPIFP30405 207 aaKnown RBP10.66□□□□□ -0.7
SDC3-201ENST00000336798 SMIM8Q96KF7 97 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 PMCHL2Q9BQD1 86 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 PLSCR2Q9NRY7 297 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 C21orf62Q9NYP8 219 aa10.66□□□□□ -0.7
SDC3-201ENST00000336798 SMDT1Q9H4I9 107 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 FNDC4Q9H6D8 234 aaPredicted RBP10.65□□□□□ -0.7
SDC3-201ENST00000336798 SPCS1Q9Y6A9 102 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 CCL3L1P16619 93 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 DEFB121Q5J5C9 76 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 SDF2L1Q9HCN8 221 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 MAP1BP46821 2468 aaKnown RBP10.65□□□□□ -0.7
SDC3-201ENST00000336798 RGPD4Q7Z3J3 1758 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 FAM90A10PA6NDY2 464 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 FAM90A18PA6NE21 464 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 FAM90A16PA6NEW6 464 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 FAM90A20PA6NIJ5 464 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 FAM90A8PA6NJQ4 464 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 FAM90A7PA6NKC0 464 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 FAM90A22PA8MWA6 464 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 FAM90A12PA8MX19 464 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 FAM90A5PA8MXJ8 464 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 FAM90A23PA8MXZ1 464 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 UBE2CO00762 179 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 FAM90A15PP0C7V4 464 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 FAM90A13PP0C7W8 464 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 FAM90A14PP0C7W9 464 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 FAM90A24PP0C7X0 464 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 TMEM42Q69YG0 159 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 UBE2DNLQ8IWF7 75 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 NPCDR1Q9BY65 106 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 IFI27L2Q9H2X8 130 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 MYO16Q9Y6X6 1858 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 C12orf77C9JDV5 145 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 LINC00614P0C842 121 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 PAPPA-AS1Q5QFB9 102 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 KIAA1217Q5T5P2 1943 aa10.65□□□□□ -0.7
SDC3-201ENST00000336798 FAM19A2Q8N3H0 131 aa10.65□□□□□ -0.71
SDC3-201ENST00000336798 TRBV5-7A0A0A0MS05 114 aa10.64□□□□□ -0.71
SDC3-201ENST00000336798 MIR17HGQ75NE6 70 aa10.64□□□□□ -0.71
SDC3-201ENST00000336798 CFHR5Q9BXR6 569 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms