RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 LYPLA2O95372 231 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 IFNA5P01569 189 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 MAS1P04201 325 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 TYMSP04818 313 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 SOD3P08294 240 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 IL7P13232 177 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 ZNF7P17097 686 aaPredicted RBP1.73□□□□□ -2.13
HMGB1-201ENST00000326004 PRPS1L1P21108 318 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 ELK4P28324 431 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 IMPA1P29218 277 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 ADORA1P30542 326 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 S100A7P31151 101 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 CCR7P32248 378 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 PYCR1P32322 319 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 IFNGR2P38484 337 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 CDKN2CP42773 168 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 ACTBP60709 375 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 AP1S1P61966 158 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 ACTG1P63261 375 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 SMAGPQ0VAQ4 97 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 ELOCQ15369 112 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 IMPG1Q17R60 797 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 CLEC12BQ2HXU8 276 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 C6orf52Q5T4I8 152 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 OGFRL1Q5TC84 451 aaPredicted RBP1.73□□□□□ -2.13
HMGB1-201ENST00000326004 NXNL2Q5VZ03 156 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 RPL13AP3Q6NVV1 102 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 PRSS54Q6PEW0 395 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 ZNF773Q6PK81 442 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 FA2HQ7L5A8 372 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 DHFR2Q86XF0 187 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 CALHM3Q86XJ0 350 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 SLC25A45Q8N413 288 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 ZDHHC22Q8N966 263 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 OR2Z1Q8NG97 314 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 CASTOR1Q8WTX7 329 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 PYDC1Q8WXC3 89 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 PTH2Q96A98 100 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 PPCDCQ96CD2 204 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 SMIM12Q96EX1 92 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 DCUN1D1Q96GG9 259 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 C14orf144Q96I85 54 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 YPEL4Q96NS1 127 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 DERL3Q96Q80 235 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 OR52B2Q96RD2 323 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 SERPINI1Q99574 410 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 ANAPC13Q9BS18 74 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 C2orf88Q9BSF0 95 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 CDCA4Q9BXL8 241 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 EBPLQ9BY08 206 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 MS4A8Q9BY19 250 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 CXorf21Q9HAI6 301 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 HRASLSQ9HDD0 168 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 XPNPEP1Q9NQW7 623 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 SAR1AQ9NR31 198 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 C14orf105Q9NVL8 296 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 GLS2Q9UI32 602 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 C3orf18Q9UK00 162 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 Q9Y3F1 56 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 NUBP2Q9Y5Y2 271 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 ZNF780BQ9Y6R6 833 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 ADGRG4Q8IZF6 3080 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 BOD1L1Q8NFC6 3051 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 SPTBN1Q01082 2364 aaKnown RBP1.73□□□□□ -2.13
HMGB1-201ENST00000326004 PDZD2O15018 2839 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 NBEAL2Q6ZNJ1 2754 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 MYO16Q9Y6X6 1858 aa1.73□□□□□ -2.13
HMGB1-201ENST00000326004 CACNA1EQ15878 2313 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 A0A087WXM4 84 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 C9orf170A2RU37 121 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 A8MWL6 223 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 C9JQL5 133 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 CXCR6O00574 342 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 TCF21O43680 179 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 SSNA1O43805 119 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 OR7C2O60412 319 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 ATG12O94817 140 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 GADD45GO95257 159 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 IFNA6P05013 189 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 S100A8P05109 93 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 SCGB1C2P0DMR2 95 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 COX4I1P13073 169 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 CBR1P16152 277 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 ZNF25P17030 456 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-201ENST00000326004 NTF3P20783 257 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 TGFBR2P37173 567 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 IDH2P48735 452 aaKnown RBP1.72□□□□□ -2.13
HMGB1-201ENST00000326004 RBP2P50120 134 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 KRTAP10-1P60331 282 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 CXCR4P61073 352 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 SNRPD2P62316 118 aaKnown RBP1.72□□□□□ -2.13
HMGB1-201ENST00000326004 RBX1P62877 108 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 REEP5Q00765 189 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 ATP5G2Q06055 141 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 SKP2Q13309 424 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 TMEM241Q24JQ0 296 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 HSD17B12Q53GQ0 312 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 PABPC1L2AQ5JQF8 200 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 LCE1CQ5T751 118 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 LCE1BQ5T7P3 118 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms