RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 TP53RKQ96S44 253 aa11.32□□□□□ -0.6
RFFL-201ENST00000315249 RAB9AP51151 201 aa11.32□□□□□ -0.6
RFFL-201ENST00000315249 C19orf35Q6ZS72 473 aa11.32□□□□□ -0.6
RFFL-201ENST00000315249 VAMP8Q9BV40 100 aa11.32□□□□□ -0.6
RFFL-201ENST00000315249 M0QZK8 103 aa11.32□□□□□ -0.6
RFFL-201ENST00000315249 ACAA1P09110 424 aaPredicted RBP11.32□□□□□ -0.6
RFFL-201ENST00000315249 WNT2P09544 360 aa11.32□□□□□ -0.6
RFFL-201ENST00000315249 MMP9P14780 707 aa11.32□□□□□ -0.6
RFFL-201ENST00000315249 MRPL13Q9BYD1 178 aaKnown RBP11.32□□□□□ -0.6
RFFL-201ENST00000315249 C17orf98A8MV24 154 aa11.32□□□□□ -0.6
RFFL-201ENST00000315249 HIST3H3Q16695 136 aa11.32□□□□□ -0.6
RFFL-201ENST00000315249 PLA2G2CQ5R387 149 aa11.32□□□□□ -0.6
RFFL-201ENST00000315249 NEUROG1Q92886 237 aa11.32□□□□□ -0.6
RFFL-201ENST00000315249 HLA-DRB5Q30154 266 aa11.31□□□□□ -0.6
RFFL-201ENST00000315249 CLLU1Q5K131 121 aa11.31□□□□□ -0.6
RFFL-201ENST00000315249 LDLRAD2Q5SZI1 272 aa11.31□□□□□ -0.6
RFFL-201ENST00000315249 C1QL1O75973 258 aa11.31□□□□□ -0.6
RFFL-201ENST00000315249 CRISP2P16562 243 aa11.31□□□□□ -0.6
RFFL-201ENST00000315249 KLHDC1Q8N7A1 406 aa11.31□□□□□ -0.6
RFFL-201ENST00000315249 LINC01587Q99440 93 aa11.31□□□□□ -0.6
RFFL-201ENST00000315249 APCSP02743 223 aa11.31□□□□□ -0.6
RFFL-201ENST00000315249 PNRC1Q12796 327 aaPredicted RBP11.31□□□□□ -0.6
RFFL-201ENST00000315249 GOLT1AQ6ZVE7 132 aa11.31□□□□□ -0.6
RFFL-201ENST00000315249 LHFPL5Q8TAF8 219 aa11.31□□□□□ -0.6
RFFL-201ENST00000315249 NUP210Q8TEM1 1887 aaPredicted RBP11.31□□□□□ -0.6
RFFL-201ENST00000315249 SNURFLB1AK76 121 aa11.31□□□□□ -0.6
RFFL-201ENST00000315249 C8orf88P0DMB2 117 aa11.31□□□□□ -0.6
RFFL-201ENST00000315249 TOMM20LQ6UXN7 152 aa11.31□□□□□ -0.6
RFFL-201ENST00000315249 Q96MF0 132 aa11.31□□□□□ -0.6
RFFL-201ENST00000315249 BPESC1Q9GZL8 116 aa11.31□□□□□ -0.6
RFFL-201ENST00000315249 SLC25A15Q9Y619 301 aa11.31□□□□□ -0.6
RFFL-201ENST00000315249 C2orf16Q68DN1 1984 aa11.31□□□□□ -0.6
RFFL-201ENST00000315249 MIEN1Q9BRT3 115 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 SAA2-SAA4A0A096LPE2 208 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 SAA2P0DJI9 122 aaPredicted RBP11.3□□□□□ -0.6
RFFL-201ENST00000315249 DLX1P56177 255 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 PAQR4Q8N4S7 273 aaPredicted RBP11.3□□□□□ -0.6
RFFL-201ENST00000315249 GLMPQ8WWB7 406 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 TIMM23O14925 209 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 FOSL1P15407 271 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 TCF15Q12870 199 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 HERPUD1Q15011 391 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 FAM74A3Q4VXF1 159 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 PGLYRP4Q96LB8 373 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 MAP1LC3CQ9BXW4 147 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 TUBD1Q9UJT1 453 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 A8MWL6 223 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 FAM90A26D6RGX4 464 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 EFNA2O43921 213 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 PRB1P04280 392 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 CKS2P33552 79 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 Q5PR19 223 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 PQLC2Q6ZP29 291 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 CLDND2Q8NHS1 167 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 GTF3AQ92664 365 aaKnown RBP11.3□□□□□ -0.6
RFFL-201ENST00000315249 ICAM4Q14773 271 aa11.3□□□□□ -0.6
RFFL-201ENST00000315249 TSC2P49815 1807 aa11.29□□□□□ -0.6
RFFL-201ENST00000315249 TCTAP57738 103 aa11.29□□□□□ -0.6
RFFL-201ENST00000315249 CYP2G1PQ6ZSU1 146 aa11.29□□□□□ -0.6
RFFL-201ENST00000315249 PLPPR1Q8TBJ4 325 aa11.29□□□□□ -0.6
RFFL-201ENST00000315249 ISOC2Q96AB3 205 aa11.29□□□□□ -0.6
RFFL-201ENST00000315249 NABP2Q9BQ15 211 aa11.29□□□□□ -0.6
RFFL-201ENST00000315249 CEACAM4O75871 244 aa11.29□□□□□ -0.6
RFFL-201ENST00000315249 C3orf36Q3SXR2 165 aa11.29□□□□□ -0.6
RFFL-201ENST00000315249 ELOA3CA0A087WX78 387 aaPredicted RBP11.29□□□□□ -0.6
RFFL-201ENST00000315249 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.29□□□□□ -0.6
RFFL-201ENST00000315249 LYZL4Q96KX0 146 aa11.29□□□□□ -0.6
RFFL-201ENST00000315249 PPP1R3EQ9H7J1 279 aa11.29□□□□□ -0.6
RFFL-201ENST00000315249 TNFSF18Q9UNG2 199 aa11.29□□□□□ -0.6
RFFL-201ENST00000315249 PSMB11A5LHX3 300 aa11.29□□□□□ -0.6
RFFL-201ENST00000315249 CD33P20138 364 aa11.29□□□□□ -0.6
RFFL-201ENST00000315249 PSMB2P49721 201 aa11.29□□□□□ -0.6
RFFL-201ENST00000315249 GALNT14Q96FL9 552 aa11.29□□□□□ -0.6
RFFL-201ENST00000315249 CBY3A6NI87 242 aa11.29□□□□□ -0.6
RFFL-201ENST00000315249 SELLP14151 372 aa11.29□□□□□ -0.6
RFFL-201ENST00000315249 SRSF12Q8WXF0 261 aaKnown RBP11.28□□□□□ -0.6
RFFL-201ENST00000315249 MBD3L4A6NDZ8 208 aaPredicted RBP11.28□□□□□ -0.6
RFFL-201ENST00000315249 MBD3L3A6NE82 208 aaPredicted RBP11.28□□□□□ -0.6
RFFL-201ENST00000315249 MBD3L5A6NJ08 208 aaPredicted RBP11.28□□□□□ -0.6
RFFL-201ENST00000315249 H1FOOQ8IZA3 346 aaPredicted RBP11.28□□□□□ -0.6
RFFL-201ENST00000315249 MBD3L2Q8NHZ7 208 aaPredicted RBP11.28□□□□□ -0.6
RFFL-201ENST00000315249 M0R3E3 92 aa11.28□□□□□ -0.6
RFFL-201ENST00000315249 IBA57Q5T440 356 aaKnown RBP11.28□□□□□ -0.6
RFFL-201ENST00000315249 LINC01356Q8N9X3 169 aa11.28□□□□□ -0.6
RFFL-201ENST00000315249 TMEM178BH3BS89 294 aa11.28□□□□□ -0.6
RFFL-201ENST00000315249 PHOX2AO14813 284 aa11.28□□□□□ -0.6
RFFL-201ENST00000315249 SAP30O75446 220 aa11.28□□□□□ -0.6
RFFL-201ENST00000315249 SEC11BP0C7V7 166 aa11.28□□□□□ -0.6
RFFL-201ENST00000315249 TMEM177Q53S58 311 aa11.28□□□□□ -0.6
RFFL-201ENST00000315249 MBNL2Q5VZF2 373 aaKnown RBP11.28□□□□□ -0.6
RFFL-201ENST00000315249 OTOGLQ3ZCN5 2332 aa11.28□□□□□ -0.6
RFFL-201ENST00000315249 TM2D1Q9BX74 207 aa11.28□□□□□ -0.6
RFFL-201ENST00000315249 DOCK11Q5JSL3 2073 aa11.28□□□□□ -0.6
RFFL-201ENST00000315249 H3BUX3 64 aa11.28□□□□□ -0.6
RFFL-201ENST00000315249 CD99P14209 185 aa11.28□□□□□ -0.6
RFFL-201ENST00000315249 RHOGP84095 191 aa11.28□□□□□ -0.6
RFFL-201ENST00000315249 AWAT1Q58HT5 328 aa11.28□□□□□ -0.6
RFFL-201ENST00000315249 MOB4Q9Y3A3 225 aa11.28□□□□□ -0.6
RFFL-201ENST00000315249 ZNF324O75467 553 aaPredicted RBP11.27□□□□□ -0.6
RFFL-201ENST00000315249 TMEM187Q14656 261 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms