RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 E9PLN8 166 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 TMEM167AQ8TBQ9 72 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 VKORC1Q9BQB6 163 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 TMEM222Q9H0R3 208 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 MBNL3Q9NUK0 354 aaKnown RBP6.53□□□□□ -1.36
SCN9A-201ENST00000303354 PGA5P0DJD9 388 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 JMJD8Q96S16 334 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 KLHDC3Q9BQ90 382 aa6.53□□□□□ -1.36
SCN9A-201ENST00000303354 IFNL4K9M1U5 179 aa6.52□□□□□ -1.36
SCN9A-201ENST00000303354 CA11O75493 328 aa6.52□□□□□ -1.36
SCN9A-201ENST00000303354 GALNT14Q96FL9 552 aa6.52□□□□□ -1.36
SCN9A-201ENST00000303354 MRPL18Q9H0U6 180 aaKnown RBP6.52□□□□□ -1.36
SCN9A-201ENST00000303354 MUC1P15941 1255 aaPredicted RBP6.52□□□□□ -1.37
SCN9A-201ENST00000303354 C1orf122Q6ZSJ8 110 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 OR10S1Q8NGN2 331 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 LYZL4Q96KX0 146 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 SRCAPQ6ZRS2 3230 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 TRAV8-6A0A0B4J262 113 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 CRPP02741 224 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 CLRN3Q8NCR9 226 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 WDFY2Q96P53 400 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 HSPB9Q9BQS6 159 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 SCN2AQ99250 2005 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 A6NDN8 102 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 ASIPP42127 132 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 Q96M66 194 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 KBTBD11-OT1A0A1B0GTJ5 212 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 HLA-DRB1P01911 266 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 RPS11P62280 158 aaKnown RBP eCLIP6.52□□□□□ -1.37
SCN9A-201ENST00000303354 CTHRC1Q96CG8 243 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 ZFP36L1Q07352 338 aaKnown RBP6.52□□□□□ -1.37
SCN9A-201ENST00000303354 IMMP2LQ96T52 175 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 RAMP3O60896 148 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 WNT2P09544 360 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 SCO2A0A1W2PP80 73 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 CLDND2Q8NHS1 167 aa6.52□□□□□ -1.37
SCN9A-201ENST00000303354 PHLDA1Q8WV24 401 aaPredicted RBP6.52□□□□□ -1.37
SCN9A-201ENST00000303354 MDC1Q14676 2089 aaKnown RBP6.52□□□□□ -1.37
SCN9A-201ENST00000303354 MARF1Q9Y4F3 1742 aaKnown RBP6.51□□□□□ -1.37
SCN9A-201ENST00000303354 ZNF883P0CG24 379 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 ZNF146Q15072 292 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 SLC25A39Q9BZJ4 359 aaPredicted RBP6.51□□□□□ -1.37
SCN9A-201ENST00000303354 A0A0G2JLM5 398 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 LILRA1O75019 489 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 ZP3P21754 424 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 SIGIRRQ6IA17 410 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 MARVELD1Q9BSK0 173 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 C5orf66Q9H5L9 145 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 ZNF250P15622 560 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 ATP5G3P48201 142 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 LAMB2P55268 1798 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 ARAP2Q8WZ64 1704 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 A8MWL6 223 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 TRGC2P03986 189 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 TMEM200BQ69YZ2 307 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 CFAP161Q6P656 301 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 TCF24Q7RTU0 167 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 FAM89BQ8N5H3 189 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 TRAV5A0A0B4J249 113 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 NBR2O15453 112 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 CDS2O95674 445 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 ZFP30Q9Y2G7 519 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 MBD3L4A6NDZ8 208 aaPredicted RBP6.51□□□□□ -1.37
SCN9A-201ENST00000303354 MBD3L3A6NE82 208 aaPredicted RBP6.51□□□□□ -1.37
SCN9A-201ENST00000303354 MBD3L5A6NJ08 208 aaPredicted RBP6.51□□□□□ -1.37
SCN9A-201ENST00000303354 DEFB130BP0DP73 79 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 DEFB130AP0DP74 79 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 PYYP10082 97 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 SRIP30626 198 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 POC1AQ8NBT0 407 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 MBD3L2Q8NHZ7 208 aaPredicted RBP6.51□□□□□ -1.37
SCN9A-201ENST00000303354 GPR132Q9UNW8 380 aa6.51□□□□□ -1.37
SCN9A-201ENST00000303354 ZNF688P0C7X2 276 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 WISP3O95389 354 aaPredicted RBP6.5□□□□□ -1.37
SCN9A-201ENST00000303354 CGB3P0DN86 165 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 TMEM187Q14656 261 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 PMCHL2Q9BQD1 86 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 CDC42EP3Q9UKI2 254 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 IGKV2-40A0A087WW87 121 aaPredicted RBP6.5□□□□□ -1.37
SCN9A-201ENST00000303354 IGKV2D-40P01614 121 aaPredicted RBP6.5□□□□□ -1.37
SCN9A-201ENST00000303354 TMEM42Q69YG0 159 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 OR1P1Q8NH06 330 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 CHCHD5Q9BSY4 110 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 PEX7O00628 323 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 HOXD3P31249 432 aaPredicted RBP6.5□□□□□ -1.37
SCN9A-201ENST00000303354 LINC01590Q5TEZ4 76 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 TMEM218A2RU14 115 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 J3QR89 54 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 NBEAP1P0C6P0 100 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 SURF2Q15527 256 aaPredicted RBP6.5□□□□□ -1.37
SCN9A-201ENST00000303354 FAM209AQ5JX71 171 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 RIPPLY2Q5TAB7 128 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 IFI27L2Q9H2X8 130 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 RPRMQ9NS64 109 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 HOXB1P14653 301 aaPredicted RBP6.5□□□□□ -1.37
SCN9A-201ENST00000303354 LSM4Q9Y4Z0 139 aaKnown RBP6.5□□□□□ -1.37
SCN9A-201ENST00000303354 FCN3O75636 299 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 CENPWQ5EE01 88 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 GZMBP10144 247 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 GALP22466 123 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms