RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 NPSP0C0P6 89 aa12.62□□□□□ -0.39
LSM6-201ENST00000296581 PDLIM4P50479 330 aa12.62□□□□□ -0.39
LSM6-201ENST00000296581 DLX1P56177 255 aa12.62□□□□□ -0.39
LSM6-201ENST00000296581 GAGE1Q13065 139 aa12.62□□□□□ -0.39
LSM6-201ENST00000296581 RHEBQ15382 184 aa12.62□□□□□ -0.39
LSM6-201ENST00000296581 PDLIM3Q53GG5 364 aaPredicted RBP12.62□□□□□ -0.39
LSM6-201ENST00000296581 OR4A47Q6IF82 309 aa12.62□□□□□ -0.39
LSM6-201ENST00000296581 OR52E5Q8NH55 327 aa12.62□□□□□ -0.39
LSM6-201ENST00000296581 ARHGAP32A7KAX9 2087 aa12.61□□□□□ -0.39
LSM6-201ENST00000296581 H3BP45 60 aa12.61□□□□□ -0.39
LSM6-201ENST00000296581 PHOX2AO14813 284 aa12.61□□□□□ -0.39
LSM6-201ENST00000296581 COX6B1P14854 86 aa12.61□□□□□ -0.39
LSM6-201ENST00000296581 REG1BP48304 166 aa12.61□□□□□ -0.39
LSM6-201ENST00000296581 TMEM177Q53S58 311 aa12.61□□□□□ -0.39
LSM6-201ENST00000296581 SP5Q6BEB4 398 aaPredicted RBP12.61□□□□□ -0.39
LSM6-201ENST00000296581 ZNF429Q86V71 674 aa12.61□□□□□ -0.39
LSM6-201ENST00000296581 KIR3DL3Q8N743 410 aa12.61□□□□□ -0.39
LSM6-201ENST00000296581 OR4A16Q8NH70 328 aa12.61□□□□□ -0.39
LSM6-201ENST00000296581 OSR1Q8TAX0 266 aaPredicted RBP12.61□□□□□ -0.39
LSM6-201ENST00000296581 SNHG12Q9BXW3 62 aa12.61□□□□□ -0.39
LSM6-201ENST00000296581 TRAV3A0A0B4J244 114 aa12.6□□□□□ -0.39
LSM6-201ENST00000296581 RBMXL2O75526 392 aaKnown RBP12.6□□□□□ -0.39
LSM6-201ENST00000296581 CST7O76096 145 aa12.6□□□□□ -0.39
LSM6-201ENST00000296581 ZFP36P26651 326 aaKnown RBP12.6□□□□□ -0.39
LSM6-201ENST00000296581 LMO4P61968 165 aa12.6□□□□□ -0.39
LSM6-201ENST00000296581 ARF6P62330 175 aa12.6□□□□□ -0.39
LSM6-201ENST00000296581 BTNL8Q6UX41 500 aa12.6□□□□□ -0.39
LSM6-201ENST00000296581 C1orf122Q6ZSJ8 110 aa12.6□□□□□ -0.39
LSM6-201ENST00000296581 PDPNQ86YL7 162 aa12.6□□□□□ -0.39
LSM6-201ENST00000296581 OR5C1Q8NGR4 320 aa12.6□□□□□ -0.39
LSM6-201ENST00000296581 COL12A1Q99715 3063 aa12.6□□□□□ -0.39
LSM6-201ENST00000296581 BUB1B-PAK6H3BSN5 160 aa12.6□□□□□ -0.39
LSM6-201ENST00000296581 FABP4P15090 132 aa12.6□□□□□ -0.39
LSM6-201ENST00000296581 DYNLT3P51808 116 aa12.6□□□□□ -0.39
LSM6-201ENST00000296581 EIF5AL1Q6IS14 154 aaKnown RBP12.6□□□□□ -0.39
LSM6-201ENST00000296581 OR4P4Q8NGL7 312 aa12.6□□□□□ -0.39
LSM6-201ENST00000296581 CLDND2Q8NHS1 167 aa12.6□□□□□ -0.39
LSM6-201ENST00000296581 CIB3Q96Q77 187 aaPredicted RBP12.6□□□□□ -0.39
LSM6-201ENST00000296581 GINS3Q9BRX5 216 aa12.6□□□□□ -0.39
LSM6-201ENST00000296581 KMT2BQ9UMN6 2715 aaPredicted RBP12.6□□□□□ -0.39
LSM6-201ENST00000296581 C15orf61A6NNL5 157 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 SRRM4A7MD48 611 aaKnown RBP12.59□□□□□ -0.39
LSM6-201ENST00000296581 HIST1H2BKO60814 126 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 HIST1H2BJP06899 126 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 FGF7P21781 194 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 HIST1H2BOP23527 126 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 PRTN3P24158 256 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 COX7A1P24310 79 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 HIST1H2BBP33778 126 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 HIST1H2BDP58876 126 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 HIST1H2BCP62807 126 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 PAX2Q02962 417 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 TMEM267Q0VDI3 215 aaPredicted RBP12.59□□□□□ -0.39
LSM6-201ENST00000296581 HIST2H2BEQ16778 126 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.59□□□□□ -0.39
LSM6-201ENST00000296581 TMEM14EPQ6UXP3 125 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 ZNF664Q8N3J9 261 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 OR11H6Q8NGC7 330 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 HIST1H2BHQ93079 126 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 HIST1H2BNQ99877 126 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 HIST1H2BMQ99879 126 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 FOXA2Q9Y261 457 aaPredicted RBP12.59□□□□□ -0.39
LSM6-201ENST00000296581 AMMECR1Q9Y4X0 333 aaPredicted RBP12.59□□□□□ -0.39
LSM6-201ENST00000296581 TET2Q6N021 2002 aaPredicted RBP12.59□□□□□ -0.39
LSM6-201ENST00000296581 ENSAO43768 121 aaKnown RBP12.59□□□□□ -0.39
LSM6-201ENST00000296581 MC5RP33032 325 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 ZNF266Q14584 549 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 PNKDQ8N490 385 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 LHX4Q969G2 390 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 ZDHHC16Q969W1 377 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 RBMXL1Q96E39 390 aaKnown RBP12.59□□□□□ -0.39
LSM6-201ENST00000296581 TMEM14BQ9NUH8 114 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 BET1LQ9NYM9 111 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 WASHC3Q9Y3C0 194 aa12.59□□□□□ -0.39
LSM6-201ENST00000296581 CEBPZOSA8MTT3 80 aa12.58□□□□□ -0.4
LSM6-201ENST00000296581 LY6LH3BQJ8 138 aa12.58□□□□□ -0.4
LSM6-201ENST00000296581 OR2C1O95371 312 aa12.58□□□□□ -0.4
LSM6-201ENST00000296581 PRB3Q04118 309 aaPredicted RBP12.58□□□□□ -0.4
LSM6-201ENST00000296581 SPANXN5Q5MJ07 72 aa12.58□□□□□ -0.4
LSM6-201ENST00000296581 HAPLN4Q86UW8 402 aa12.58□□□□□ -0.4
LSM6-201ENST00000296581 TMEM217Q8N7C4 229 aa12.58□□□□□ -0.4
LSM6-201ENST00000296581 PACRGQ96M98 296 aaPredicted RBP12.58□□□□□ -0.4
LSM6-201ENST00000296581 A1L4Q6 167 aa12.58□□□□□ -0.4
LSM6-201ENST00000296581 UPK2O00526 184 aa12.58□□□□□ -0.4
LSM6-201ENST00000296581 METTL15P1P0C7V9 234 aa12.58□□□□□ -0.4
LSM6-201ENST00000296581 HCP5Q6MZN7 132 aa12.58□□□□□ -0.4
LSM6-201ENST00000296581 OR4C13Q8NGP0 309 aa12.58□□□□□ -0.4
LSM6-201ENST00000296581 FLYWCH2Q96CP2 140 aaKnown RBP12.58□□□□□ -0.4
LSM6-201ENST00000296581 OR4C12Q96R67 309 aa12.58□□□□□ -0.4
LSM6-201ENST00000296581 ATP5SQ99766 215 aa12.58□□□□□ -0.4
LSM6-201ENST00000296581 NDUFS8O00217 210 aa12.57□□□□□ -0.4
LSM6-201ENST00000296581 SEC11BP0C7V7 166 aa12.57□□□□□ -0.4
LSM6-201ENST00000296581 ARL16Q0P5N6 197 aa12.57□□□□□ -0.4
LSM6-201ENST00000296581 C10orf105Q8TEF2 133 aa12.57□□□□□ -0.4
LSM6-201ENST00000296581 FAM168AQ92567 244 aa12.57□□□□□ -0.4
LSM6-201ENST00000296581 HARBI1Q96MB7 349 aa12.57□□□□□ -0.4
LSM6-201ENST00000296581 PRNDQ9UKY0 176 aa12.57□□□□□ -0.4
LSM6-201ENST00000296581 VWC2LB2RUY7 222 aa12.57□□□□□ -0.4
LSM6-201ENST00000296581 DFFBO76075 338 aa12.57□□□□□ -0.4
LSM6-201ENST00000296581 SAA1P0DJI8 122 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms