RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 FAM90A16PA6NEW6 464 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 FAM90A20PA6NIJ5 464 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 FAM90A8PA6NJQ4 464 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 FAM90A7PA6NKC0 464 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 FAM90A22PA8MWA6 464 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 FAM90A12PA8MX19 464 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 FAM90A5PA8MXJ8 464 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 FAM90A23PA8MXZ1 464 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 FAM90A15PP0C7V4 464 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 FAM90A13PP0C7W8 464 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 FAM90A14PP0C7W9 464 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 FAM90A24PP0C7X0 464 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 ATP5LO75964 103 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 IL11P20809 199 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 SOX8P57073 446 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 CRIPAKQ8N1N5 446 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 LINC00587B1AMM8 73 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 FGF5P12034 268 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 HOXA5P20719 270 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 CT55Q8WUE5 264 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 TRBV7-9A0A0J9YWB2 115 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 LOC105371267A0A1B0GV96 52 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 NR2C2APQ86WQ0 139 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 APCDD1LQ8NCL9 501 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 SSBP3Q9BWW4 388 aaPredicted RBP8.44□□□□□ -1.06
COL6A3-201ENST00000295550 ARRDC1-AS1Q9H2J1 176 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 VENTXO95231 258 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 CRYBB3P26998 211 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 SLC25A47Q6Q0C1 308 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 OR51G1Q8NGK1 321 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 TRAV8-4A0A0B4J246 113 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 EGR4Q05215 589 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 LURAP1LQ8IV03 231 aa8.44□□□□□ -1.06
COL6A3-201ENST00000295550 TMEM262E9PQX1 116 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 SPRED2Q7Z698 418 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 H3BUT2 72 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 REG1AP05451 166 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 RPL27AP46776 148 aaKnown RBP8.43□□□□□ -1.06
COL6A3-201ENST00000295550 TMEM252Q8N6L7 170 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 NPFFR1Q9GZQ6 430 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 SLC25A53Q5H9E4 307 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 DPH3Q96FX2 82 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 SCGB3A1Q96QR1 104 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 C19orf24Q9BVV8 132 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 EFNB1P98172 346 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 FBLN7Q53RD9 439 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 KIF26AQ9ULI4 1882 aaPredicted RBP8.43□□□□□ -1.06
COL6A3-201ENST00000295550 FAM90A26D6RGX4 464 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 IL9P15248 144 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 LEPP41159 167 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 SYNGR3O43761 229 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 EFEMP2O95967 443 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 P2RY4P51582 365 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 RAX2Q96IS3 184 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 MRPL32Q9BYC8 188 aaKnown RBP8.43□□□□□ -1.06
COL6A3-201ENST00000295550 CXorf66Q5JRM2 361 aaPredicted RBP8.43□□□□□ -1.06
COL6A3-201ENST00000295550 PPIAL4DF5H284 164 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 GPR183P32249 361 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 FOXI3A8MTJ6 420 aaPredicted RBP8.43□□□□□ -1.06
COL6A3-201ENST00000295550 FAM106CPP0CH98 169 aa8.43□□□□□ -1.06
COL6A3-201ENST00000295550 NKX2-8O15522 239 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 SNAI3Q3KNW1 292 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 CEACAM21Q3KPI0 293 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 H3BTX0 84 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 GCHFRP30047 84 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 SELENOHQ8IZQ5 122 aaKnown RBP8.42□□□□□ -1.06
COL6A3-201ENST00000295550 TTC9CQ8N5M4 171 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 C5orf30Q96GV9 206 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 APOHP02749 345 aaPredicted RBP8.42□□□□□ -1.06
COL6A3-201ENST00000295550 RND2P52198 227 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 SNRPD3P62318 126 aaKnown RBP8.42□□□□□ -1.06
COL6A3-201ENST00000295550 PAX2Q02962 417 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 RCC1LQ96I51 464 aaKnown RBP8.42□□□□□ -1.06
COL6A3-201ENST00000295550 ZNF257Q9Y2Q1 563 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 PGPA6NDG6 321 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 POC1AQ8NBT0 407 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 Q96M66 194 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 MAGEA5P43359 124 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 C8orf88P0DMB2 117 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 CA7P43166 264 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 GPR146Q96CH1 333 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 VKORC1L1Q8N0U8 176 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 FAM19A2Q8N3H0 131 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 SCTP09683 121 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 FOXA3P55318 350 aaPredicted RBP8.42□□□□□ -1.06
COL6A3-201ENST00000295550 MAJINQ3KP22 176 aa8.42□□□□□ -1.06
COL6A3-201ENST00000295550 TMEM14DPA8MWL7 114 aa8.41□□□□□ -1.06
COL6A3-201ENST00000295550 H7C1H1 209 aa8.41□□□□□ -1.06
COL6A3-201ENST00000295550 CNTFRP26992 372 aa8.41□□□□□ -1.06
COL6A3-201ENST00000295550 ZNF488Q96MN9 340 aa8.41□□□□□ -1.06
COL6A3-201ENST00000295550 IGHV1-45A0A0A0MS14 117 aa8.41□□□□□ -1.06
COL6A3-201ENST00000295550 PHLDA1Q8WV24 401 aaPredicted RBP8.41□□□□□ -1.06
COL6A3-201ENST00000295550 NPCDR1Q9BY65 106 aa8.41□□□□□ -1.06
COL6A3-201ENST00000295550 C21orf140B9A014 251 aa8.41□□□□□ -1.06
COL6A3-201ENST00000295550 CEACAM4O75871 244 aa8.41□□□□□ -1.06
COL6A3-201ENST00000295550 C2orf68Q2NKX9 166 aa8.41□□□□□ -1.06
COL6A3-201ENST00000295550 GAS1P54826 345 aa8.41□□□□□ -1.06
COL6A3-201ENST00000295550 LAMTOR2Q9Y2Q5 125 aa8.41□□□□□ -1.06
COL6A3-201ENST00000295550 CARHSP1Q9Y2V2 147 aaKnown RBP8.41□□□□□ -1.06
COL6A3-201ENST00000295550 A0A1B0GUT8 65 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms