RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 PACRGQ96M98 296 aaPredicted RBP13.64□□□□□ -0.23
VPS54-201ENST00000272322 IMMP2LQ96T52 175 aa13.64□□□□□ -0.23
VPS54-201ENST00000272322 Q9UFV3 132 aa13.64□□□□□ -0.23
VPS54-201ENST00000272322 RBFOX2O43251 390 aaKnown RBP eCLIP13.63□□□□□ -0.23
VPS54-201ENST00000272322 GNB2P62879 340 aa13.63□□□□□ -0.23
VPS54-201ENST00000272322 GFRALQ6UXV0 394 aa13.63□□□□□ -0.23
VPS54-201ENST00000272322 GAFA1Q96PS6 74 aa13.63□□□□□ -0.23
VPS54-201ENST00000272322 TCEAL7Q9BRU2 100 aa13.63□□□□□ -0.23
VPS54-201ENST00000272322 DPRXA6NFQ7 191 aa13.63□□□□□ -0.23
VPS54-201ENST00000272322 B4DEV8 164 aa13.63□□□□□ -0.23
VPS54-201ENST00000272322 IL6RP08887 468 aaPredicted RBP13.63□□□□□ -0.23
VPS54-201ENST00000272322 FRMD6-AS1P0C7T7 363 aa13.63□□□□□ -0.23
VPS54-201ENST00000272322 Q6ZS92 163 aa13.63□□□□□ -0.23
VPS54-201ENST00000272322 DOLPP1Q86YN1 238 aa13.63□□□□□ -0.23
VPS54-201ENST00000272322 OR9G1Q8NH87 305 aa13.63□□□□□ -0.23
VPS54-201ENST00000272322 GRIFINA4D1Z8 144 aa13.63□□□□□ -0.23
VPS54-201ENST00000272322 E7EUB6 86 aa13.63□□□□□ -0.23
VPS54-201ENST00000272322 VDAC2P45880 294 aaPredicted RBP13.63□□□□□ -0.23
VPS54-201ENST00000272322 SGMS2Q8NHU3 365 aa13.63□□□□□ -0.23
VPS54-201ENST00000272322 SLC25A10Q9UBX3 287 aaPredicted RBP13.63□□□□□ -0.23
VPS54-201ENST00000272322 YTHDF2Q9Y5A9 579 aaKnown RBP13.63□□□□□ -0.23
VPS54-201ENST00000272322 SEC14L6B5MCN3 397 aa13.62□□□□□ -0.23
VPS54-201ENST00000272322 PFN1P07737 140 aaKnown RBP13.62□□□□□ -0.23
VPS54-201ENST00000272322 TNFSF4P23510 183 aa13.62□□□□□ -0.23
VPS54-201ENST00000272322 OR2T10Q8NGZ9 312 aa13.62□□□□□ -0.23
VPS54-201ENST00000272322 MRPL20Q9BYC9 149 aaKnown RBP13.62□□□□□ -0.23
VPS54-201ENST00000272322 OR51M1Q9H341 326 aa13.62□□□□□ -0.23
VPS54-201ENST00000272322 PRRG2O14669 202 aa13.62□□□□□ -0.23
VPS54-201ENST00000272322 TCL1AP56279 114 aa13.62□□□□□ -0.23
VPS54-201ENST00000272322 PSG5Q15238 335 aa13.62□□□□□ -0.23
VPS54-201ENST00000272322 OR2T6Q8NHC8 308 aa13.62□□□□□ -0.23
VPS54-201ENST00000272322 SAP30LQ9HAJ7 183 aa13.62□□□□□ -0.23
VPS54-201ENST00000272322 IDI2-AS1Q9NZ38 188 aa13.62□□□□□ -0.23
VPS54-201ENST00000272322 TIMM9Q9Y5J7 89 aa13.62□□□□□ -0.23
VPS54-201ENST00000272322 PLEKHA3Q9HB20 300 aa13.62□□□□□ -0.23
VPS54-201ENST00000272322 LY6HO94772 140 aa13.61□□□□□ -0.23
VPS54-201ENST00000272322 CT45A6P0DMU7 189 aa13.61□□□□□ -0.23
VPS54-201ENST00000272322 CT45A5P0DMU8 189 aa13.61□□□□□ -0.23
VPS54-201ENST00000272322 CT45A7P0DMV0 189 aa13.61□□□□□ -0.23
VPS54-201ENST00000272322 HSPE1P61604 102 aaKnown RBP13.61□□□□□ -0.23
VPS54-201ENST00000272322 TCF15Q12870 199 aa13.61□□□□□ -0.23
VPS54-201ENST00000272322 TEPPQ6URK8 271 aa13.61□□□□□ -0.23
VPS54-201ENST00000272322 UNQ6494/PRO21346Q6UXR6 183 aa13.61□□□□□ -0.23
VPS54-201ENST00000272322 C1orf159Q96HA4 380 aa13.61□□□□□ -0.23
VPS54-201ENST00000272322 UHRF2Q96PU4 802 aa13.61□□□□□ -0.23
VPS54-201ENST00000272322 NPVFQ9HCQ7 196 aa13.61□□□□□ -0.23
VPS54-201ENST00000272322 C16orf97H3BN30 126 aa13.61□□□□□ -0.23
VPS54-201ENST00000272322 FAM87AP0C7U9 286 aa13.61□□□□□ -0.23
VPS54-201ENST00000272322 EFNB3Q15768 340 aa13.61□□□□□ -0.23
VPS54-201ENST00000272322 TMEM108Q6UXF1 575 aa13.61□□□□□ -0.23
VPS54-201ENST00000272322 LINC01551Q86U37 167 aa13.61□□□□□ -0.23
VPS54-201ENST00000272322 HARBI1Q96MB7 349 aa13.61□□□□□ -0.23
VPS54-201ENST00000272322 HIST1H2BLQ99880 126 aa13.61□□□□□ -0.23
VPS54-201ENST00000272322 TRAV5A0A0B4J249 113 aa13.6□□□□□ -0.23
VPS54-201ENST00000272322 LHBP01229 141 aa13.6□□□□□ -0.23
VPS54-201ENST00000272322 OR10J1P30954 320 aa13.6□□□□□ -0.23
VPS54-201ENST00000272322 OR10X1Q8NGY0 326 aa13.6□□□□□ -0.23
VPS54-201ENST00000272322 OCC1Q8TAD7 63 aa13.6□□□□□ -0.23
VPS54-201ENST00000272322 DYNLRB1Q9NP97 96 aa13.6□□□□□ -0.23
VPS54-201ENST00000272322 C15orf61A6NNL5 157 aa13.6□□□□□ -0.23
VPS54-201ENST00000272322 H3BTX0 84 aa13.6□□□□□ -0.23
VPS54-201ENST00000272322 RPP30P78346 268 aaKnown RBP13.6□□□□□ -0.23
VPS54-201ENST00000272322 MANBALQ9NQG1 85 aa13.6□□□□□ -0.23
VPS54-201ENST00000272322 TMEM250H0YL14 139 aa13.6□□□□□ -0.23
VPS54-201ENST00000272322 MKRN2OSH3BPM6 223 aa13.6□□□□□ -0.23
VPS54-201ENST00000272322 WNT2P09544 360 aa13.6□□□□□ -0.23
VPS54-201ENST00000272322 SAA1P0DJI8 122 aaPredicted RBP13.6□□□□□ -0.23
VPS54-201ENST00000272322 FXYD3Q14802 87 aa13.6□□□□□ -0.23
VPS54-201ENST00000272322 HLA-DRB5Q30154 266 aa13.6□□□□□ -0.23
VPS54-201ENST00000272322 STUMQ69YW2 141 aa13.6□□□□□ -0.23
VPS54-201ENST00000272322 F2RL2O00254 374 aa13.59□□□□□ -0.23
VPS54-201ENST00000272322 RND2P52198 227 aa13.59□□□□□ -0.23
VPS54-201ENST00000272322 PMS2P11Q13670 270 aa13.59□□□□□ -0.23
VPS54-201ENST00000272322 HCP5Q6MZN7 132 aa13.59□□□□□ -0.23
VPS54-201ENST00000272322 RPH3ALQ9UNE2 315 aa13.59□□□□□ -0.23
VPS54-201ENST00000272322 IGKV1OR2-108A0A075B7D4 117 aa13.59□□□□□ -0.23
VPS54-201ENST00000272322 F6UZH7 168 aa13.59□□□□□ -0.23
VPS54-201ENST00000272322 CRYBB3P26998 211 aa13.59□□□□□ -0.23
VPS54-201ENST00000272322 ADIPOQQ15848 244 aa13.59□□□□□ -0.23
VPS54-201ENST00000272322 TRAT1Q6PIZ9 186 aa13.59□□□□□ -0.23
VPS54-201ENST00000272322 HRASP01112 189 aa13.59□□□□□ -0.23
VPS54-201ENST00000272322 SSBP2P81877 361 aaPredicted RBP13.59□□□□□ -0.23
VPS54-201ENST00000272322 LINC00479Q96M42 142 aa13.59□□□□□ -0.23
VPS54-201ENST00000272322 IL3RAP26951 378 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 MAS1LP35410 378 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 RITA1Q96K30 269 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 COMMD5Q9GZQ3 224 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 IL19Q9UHD0 177 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 MDFIC2A0A1B0GVS7 189 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 A0A1W2PRD5 423 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 A0A1W2PRF3 423 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 A0A1W2PRM7 423 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 MGST1P10620 155 aaKnown RBP13.58□□□□□ -0.24
VPS54-201ENST00000272322 CBLN1P23435 193 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 TIMP3P35625 211 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 RAB7AP51149 207 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 SUMO1P63165 101 aaKnown RBP13.58□□□□□ -0.24
VPS54-201ENST00000272322 CENPVQ7Z7K6 275 aaPredicted RBP13.58□□□□□ -0.24
VPS54-201ENST00000272322 SERTAD4Q9NUC0 356 aa13.58□□□□□ -0.24
VPS54-201ENST00000272322 CELSR1Q9NYQ6 3014 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms