RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 OCC1Q8TAD7 63 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 ALKBH7Q9BT30 221 aaPredicted RBP8.31□□□□□ -1.08
LIG3-201ENST00000262327 YTHDF2Q9Y5A9 579 aaKnown RBP8.31□□□□□ -1.08
LIG3-201ENST00000262327 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.31□□□□□ -1.08
LIG3-201ENST00000262327 ZNF705FA8MVS1 300 aaPredicted RBP8.31□□□□□ -1.08
LIG3-201ENST00000262327 F6UZH7 168 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 ZNF705DP0CH99 300 aaPredicted RBP8.31□□□□□ -1.08
LIG3-201ENST00000262327 ZNF705BP0CI00 300 aaPredicted RBP8.31□□□□□ -1.08
LIG3-201ENST00000262327 PRDX2P32119 198 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 ADMP35318 185 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 COL5A1-AS1Q5SY13 56 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 MOB3BQ86TA1 216 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 ZADH2Q8N4Q0 377 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 GMPPAQ96IJ6 420 aaPredicted RBP8.31□□□□□ -1.08
LIG3-201ENST00000262327 CXXC4Q9H2H0 198 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 PPIAL4AQ9Y536 164 aa8.31□□□□□ -1.08
LIG3-201ENST00000262327 SPTBN2O15020 2390 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 ADGRG4Q8IZF6 3080 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 MDFIC2A0A1B0GVS7 189 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 SLC35B1P78383 322 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 DUX4L9Q6RFH8 374 aaPredicted RBP8.3□□□□□ -1.08
LIG3-201ENST00000262327 MRPL52Q86TS9 123 aaKnown RBP8.3□□□□□ -1.08
LIG3-201ENST00000262327 CISD2Q8N5K1 135 aaKnown RBP8.3□□□□□ -1.08
LIG3-201ENST00000262327 ACY3Q96HD9 319 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 SFRP2Q96HF1 295 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 ZDHHC11Q9H8X9 412 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 F2Z2F3 143 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 C15orf65H3BRN8 121 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 M0QZ24 198 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 KITLGP21583 273 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 GATA2P23769 480 aaPredicted RBP8.3□□□□□ -1.08
LIG3-201ENST00000262327 SRP14P37108 136 aaKnown RBP8.3□□□□□ -1.08
LIG3-201ENST00000262327 RPL15P61313 204 aaKnown RBP8.3□□□□□ -1.08
LIG3-201ENST00000262327 MSMPQ1L6U9 139 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 TDRG1Q3Y452 100 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 FAM214BQ7L5A3 538 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 GBGT1Q8N5D6 347 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 WDR31Q8NA23 367 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 C9orf106Q8NAJ2 232 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 NUDT11Q96G61 164 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 HSD17B10Q99714 261 aaKnown RBP8.3□□□□□ -1.08
LIG3-201ENST00000262327 ZNRD1Q9P1U0 126 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 ABCA1O95477 2261 aa8.3□□□□□ -1.08
LIG3-201ENST00000262327 PKDREJQ9NTG1 2253 aa8.29□□□□□ -1.08
LIG3-201ENST00000262327 PPBPP02775 128 aa8.29□□□□□ -1.08
LIG3-201ENST00000262327 VWC2Q2TAL6 325 aa8.29□□□□□ -1.08
LIG3-201ENST00000262327 SMIM21Q3B7S5 101 aa8.29□□□□□ -1.08
LIG3-201ENST00000262327 COA6Q5JTJ3 125 aaKnown RBP8.29□□□□□ -1.08
LIG3-201ENST00000262327 SPACA3Q8IXA5 215 aa8.29□□□□□ -1.08
LIG3-201ENST00000262327 DEFB108BQ8NET1 73 aa8.29□□□□□ -1.08
LIG3-201ENST00000262327 GGTLC1Q9BX51 225 aa8.29□□□□□ -1.08
LIG3-201ENST00000262327 FKBP11Q9NYL4 201 aa8.29□□□□□ -1.08
LIG3-201ENST00000262327 PCNX1Q96RV3 2341 aa8.29□□□□□ -1.08
LIG3-201ENST00000262327 TPRP12270 2363 aaKnown RBP8.29□□□□□ -1.08
LIG3-201ENST00000262327 IGKV1D-17A0A075B6S4 117 aa8.29□□□□□ -1.08
LIG3-201ENST00000262327 MORN2Q502X0 79 aa8.29□□□□□ -1.08
LIG3-201ENST00000262327 C1orf159Q96HA4 380 aa8.29□□□□□ -1.08
LIG3-201ENST00000262327 CSTL1Q9H114 145 aa8.29□□□□□ -1.08
LIG3-201ENST00000262327 TMEM140Q9NV12 185 aa8.29□□□□□ -1.08
LIG3-201ENST00000262327 ELOVL5Q9NYP7 299 aa8.29□□□□□ -1.08
LIG3-201ENST00000262327 POLEQ07864 2286 aa8.29□□□□□ -1.08
LIG3-201ENST00000262327 LOC105371242A0A075B767 164 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 AHRRA9YTQ3 701 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 PDE6DO43924 150 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 VENTXO95231 258 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 IGHG3P01860 377 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 TIMP3P35625 211 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 KIR2DL2P43627 348 aaPredicted RBP8.28□□□□□ -1.08
LIG3-201ENST00000262327 RPL31P62899 125 aaKnown RBP8.28□□□□□ -1.08
LIG3-201ENST00000262327 ZNF90Q03938 601 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 Q6ZT83 130 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 OR4P4Q8NGL7 312 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 MS4A10Q96PG2 267 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 J3QW42 95 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 K7EN84 100 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 PDLIM4P50479 330 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 INO80CQ6PI98 192 aaPredicted RBP8.28□□□□□ -1.08
LIG3-201ENST00000262327 S1PR3Q99500 378 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 MIEN1Q9BRT3 115 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 RNF24Q9Y225 148 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 TCF19Q9Y242 345 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 ATMQ13315 3056 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 SPRY3O43610 288 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 NDUFB8O95169 186 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 CGAP01215 116 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 BMI1P35226 326 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 ERVK-16P61578 105 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 RELBQ01201 579 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 MLANAQ16655 118 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 LHFPL4Q7Z7J7 247 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 MOGAT3Q86VF5 341 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 OR10G8Q8NGN5 311 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 FAM216AQ8WUB2 273 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 KCNIP2Q9NS61 270 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 NAGKQ9UJ70 344 aa8.28□□□□□ -1.08
LIG3-201ENST00000262327 PTPRZ1P23471 2315 aaPredicted RBP8.27□□□□□ -1.09
LIG3-201ENST00000262327 K7ENP7 123 aa8.27□□□□□ -1.09
LIG3-201ENST00000262327 TYMSP04818 313 aa8.27□□□□□ -1.09
LIG3-201ENST00000262327 IGFBP2P18065 325 aa8.27□□□□□ -1.09
LIG3-201ENST00000262327 VDAC2P45880 294 aaPredicted RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms