RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 ZNF439Q8NDP4 499 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 CHODLQ9H9P2 273 aa13.48□□□□□ -0.25
HOXD3-201ENST00000249440 SEPSECSQ9HD40 501 aaKnown RBP13.48□□□□□ -0.25
HOXD3-201ENST00000249440 YLPM1P49750 1951 aaKnown RBP13.48□□□□□ -0.25
HOXD3-201ENST00000249440 RAI1Q7Z5J4 1906 aaPredicted RBP13.48□□□□□ -0.25
HOXD3-201ENST00000249440 PGPEP1LA6NFU8 196 aa13.47□□□□□ -0.25
HOXD3-201ENST00000249440 FNDC10F2Z333 226 aa13.47□□□□□ -0.25
HOXD3-201ENST00000249440 IGHV1-46P01743 117 aa13.47□□□□□ -0.25
HOXD3-201ENST00000249440 TNFSF4P23510 183 aa13.47□□□□□ -0.25
HOXD3-201ENST00000249440 GCHFRP30047 84 aa13.47□□□□□ -0.25
HOXD3-201ENST00000249440 DUX4L9Q6RFH8 374 aaPredicted RBP13.47□□□□□ -0.25
HOXD3-201ENST00000249440 ZNF114Q8NC26 417 aa13.47□□□□□ -0.25
HOXD3-201ENST00000249440 DEFB108BQ8NET1 73 aa13.47□□□□□ -0.25
HOXD3-201ENST00000249440 PRNDQ9UKY0 176 aa13.47□□□□□ -0.25
HOXD3-201ENST00000249440 OR51B2Q9Y5P1 312 aa13.47□□□□□ -0.25
HOXD3-201ENST00000249440 ACACAQ13085 2346 aa13.47□□□□□ -0.25
HOXD3-201ENST00000249440 TRBV20OR9-2A0A075B6H5 130 aa13.47□□□□□ -0.25
HOXD3-201ENST00000249440 SCO2A0A1W2PP80 73 aa13.47□□□□□ -0.25
HOXD3-201ENST00000249440 CNN1P51911 297 aaKnown RBP13.47□□□□□ -0.25
HOXD3-201ENST00000249440 TMEM30BQ3MIR4 351 aa13.47□□□□□ -0.25
HOXD3-201ENST00000249440 SGMS2Q8NHU3 365 aa13.47□□□□□ -0.25
HOXD3-201ENST00000249440 GAFA1Q96PS6 74 aa13.47□□□□□ -0.25
HOXD3-201ENST00000249440 SFXN3Q9BWM7 321 aa13.47□□□□□ -0.25
HOXD3-201ENST00000249440 HINT2Q9BX68 163 aa13.47□□□□□ -0.25
HOXD3-201ENST00000249440 TP53TG5Q9Y2B4 290 aa13.47□□□□□ -0.25
HOXD3-201ENST00000249440 ZNF257Q9Y2Q1 563 aa13.47□□□□□ -0.25
HOXD3-201ENST00000249440 GZMBP10144 247 aa13.46□□□□□ -0.25
HOXD3-201ENST00000249440 GNG10P50151 68 aa13.46□□□□□ -0.25
HOXD3-201ENST00000249440 ZNF788Q6ZQV5 615 aa13.46□□□□□ -0.25
HOXD3-201ENST00000249440 TCF23Q7RTU1 214 aa13.46□□□□□ -0.25
HOXD3-201ENST00000249440 NEUROG1Q92886 237 aa13.46□□□□□ -0.25
HOXD3-201ENST00000249440 LINC00574Q9H8X3 128 aa13.46□□□□□ -0.25
HOXD3-201ENST00000249440 YTHDF2Q9Y5A9 579 aaKnown RBP13.46□□□□□ -0.25
HOXD3-201ENST00000249440 TRAPPC1Q9Y5R8 145 aa13.46□□□□□ -0.25
HOXD3-201ENST00000249440 DYSFO75923 2080 aa13.46□□□□□ -0.26
HOXD3-201ENST00000249440 J3QR06 171 aa13.46□□□□□ -0.26
HOXD3-201ENST00000249440 IRF2P14316 349 aa13.46□□□□□ -0.26
HOXD3-201ENST00000249440 Q6ZS92 163 aa13.46□□□□□ -0.26
HOXD3-201ENST00000249440 TMEM18Q96B42 140 aa13.46□□□□□ -0.26
HOXD3-201ENST00000249440 CCL13Q99616 98 aa13.46□□□□□ -0.26
HOXD3-201ENST00000249440 PLEKHA3Q9HB20 300 aa13.46□□□□□ -0.26
HOXD3-201ENST00000249440 GCGP01275 180 aa13.45□□□□□ -0.26
HOXD3-201ENST00000249440 RPL15P61313 204 aaKnown RBP13.45□□□□□ -0.26
HOXD3-201ENST00000249440 RPL31P62899 125 aaKnown RBP13.45□□□□□ -0.26
HOXD3-201ENST00000249440 PRR20EP86478 221 aa13.45□□□□□ -0.26
HOXD3-201ENST00000249440 PRR20CP86479 221 aa13.45□□□□□ -0.26
HOXD3-201ENST00000249440 PRR20DP86480 221 aa13.45□□□□□ -0.26
HOXD3-201ENST00000249440 PRR20BP86481 221 aa13.45□□□□□ -0.26
HOXD3-201ENST00000249440 PRR20AP86496 221 aa13.45□□□□□ -0.26
HOXD3-201ENST00000249440 RTL8BQ17RB0 113 aa13.45□□□□□ -0.26
HOXD3-201ENST00000249440 OCC1Q8TAD7 63 aa13.45□□□□□ -0.26
HOXD3-201ENST00000249440 ZCCHC14Q8WYQ9 949 aaKnown RBP13.45□□□□□ -0.26
HOXD3-201ENST00000249440 IGFBP2P18065 325 aa13.45□□□□□ -0.26
HOXD3-201ENST00000249440 GPX4P36969 197 aaPredicted RBP13.45□□□□□ -0.26
HOXD3-201ENST00000249440 PRCDQ00LT1 54 aa13.45□□□□□ -0.26
HOXD3-201ENST00000249440 SLC25A48Q6ZT89 311 aaKnown RBP13.45□□□□□ -0.26
HOXD3-201ENST00000249440 UHRF2Q96PU4 802 aa13.45□□□□□ -0.26
HOXD3-201ENST00000249440 CD40P25942 277 aa13.44□□□□□ -0.26
HOXD3-201ENST00000249440 DDTP30046 118 aa13.44□□□□□ -0.26
HOXD3-201ENST00000249440 FAM27E3Q08E93 113 aa13.44□□□□□ -0.26
HOXD3-201ENST00000249440 SPATA31B1PQ5VZV4 182 aa13.44□□□□□ -0.26
HOXD3-201ENST00000249440 TEX38Q6PEX7 206 aa13.44□□□□□ -0.26
HOXD3-201ENST00000249440 FAM216BQ8N7L0 139 aa13.44□□□□□ -0.26
HOXD3-201ENST00000249440 OR4P4Q8NGL7 312 aa13.44□□□□□ -0.26
HOXD3-201ENST00000249440 OR10G8Q8NGN5 311 aa13.44□□□□□ -0.26
HOXD3-201ENST00000249440 ELOVL5Q9NYP7 299 aa13.44□□□□□ -0.26
HOXD3-201ENST00000249440 RPUSD1Q9UJJ7 312 aaKnown RBP13.44□□□□□ -0.26
HOXD3-201ENST00000249440 TNCP24821 2201 aa13.44□□□□□ -0.26
HOXD3-201ENST00000249440 RP1L1Q8IWN7 2480 aaPredicted RBP13.44□□□□□ -0.26
HOXD3-201ENST00000249440 UPK2O00526 184 aa13.44□□□□□ -0.26
HOXD3-201ENST00000249440 CRYABP02511 175 aaKnown RBP13.44□□□□□ -0.26
HOXD3-201ENST00000249440 CT45A6P0DMU7 189 aa13.44□□□□□ -0.26
HOXD3-201ENST00000249440 CT45A5P0DMU8 189 aa13.44□□□□□ -0.26
HOXD3-201ENST00000249440 CT45A7P0DMV0 189 aa13.44□□□□□ -0.26
HOXD3-201ENST00000249440 MYOD1P15172 320 aa13.44□□□□□ -0.26
HOXD3-201ENST00000249440 ATP5IP56385 69 aaPredicted RBP13.44□□□□□ -0.26
HOXD3-201ENST00000249440 SCNM1Q9BWG6 230 aa13.44□□□□□ -0.26
HOXD3-201ENST00000249440 SLC35D1Q9NTN3 355 aa13.44□□□□□ -0.26
HOXD3-201ENST00000249440 FKBP11Q9NYL4 201 aa13.44□□□□□ -0.26
HOXD3-201ENST00000249440 hADV38S2A0JD32 116 aa13.43□□□□□ -0.26
HOXD3-201ENST00000249440 A8MXE2 369 aa13.43□□□□□ -0.26
HOXD3-201ENST00000249440 FOXH1O75593 365 aa13.43□□□□□ -0.26
HOXD3-201ENST00000249440 CEACAM8P31997 349 aaPredicted RBP13.43□□□□□ -0.26
HOXD3-201ENST00000249440 TEX36Q5VZQ5 186 aa13.43□□□□□ -0.26
HOXD3-201ENST00000249440 C11orf52Q96A22 123 aa13.43□□□□□ -0.26
HOXD3-201ENST00000249440 PIEZO2Q9H5I5 2752 aa13.43□□□□□ -0.26
HOXD3-201ENST00000249440 MMP23AO75900 390 aa13.42□□□□□ -0.26
HOXD3-201ENST00000249440 IGKV1-16P04430 117 aa13.42□□□□□ -0.26
HOXD3-201ENST00000249440 CCKARP32238 428 aa13.42□□□□□ -0.26
HOXD3-201ENST00000249440 PRSS8Q16651 343 aa13.42□□□□□ -0.26
HOXD3-201ENST00000249440 C14orf144Q96I85 54 aa13.42□□□□□ -0.26
HOXD3-201ENST00000249440 PRO1933Q9H354 126 aa13.42□□□□□ -0.26
HOXD3-201ENST00000249440 SLC25A10Q9UBX3 287 aaPredicted RBP13.42□□□□□ -0.26
HOXD3-201ENST00000249440 ARL2-SNX15V9GYD0 113 aa13.42□□□□□ -0.26
HOXD3-201ENST00000249440 C9JCJ5 164 aa13.42□□□□□ -0.26
HOXD3-201ENST00000249440 LINC00869P0C866 280 aa13.42□□□□□ -0.26
HOXD3-201ENST00000249440 HNF1AP20823 631 aa13.42□□□□□ -0.26
HOXD3-201ENST00000249440 C22orf34Q6ZV56 151 aa13.42□□□□□ -0.26
HOXD3-201ENST00000249440 NUP37Q8NFH4 326 aa13.42□□□□□ -0.26
HOXD3-201ENST00000249440 SLC45A2Q9UMX9 530 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms