RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 C1orf174Q8IYL3 243 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 IL22RA2Q969J5 263 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 NIPSNAP3BQ9BS92 247 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 AGMATQ9BSE5 352 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 SMCO4Q9NRQ5 59 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 SLC35D1Q9NTN3 355 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 TMEM106BQ9NUM4 274 aa7.06□□□□□ -1.28
VPS4B-201ENST00000238497 H3BQ15 152 aa7.05□□□□□ -1.28
VPS4B-201ENST00000238497 C15orf65H3BRN8 121 aa7.05□□□□□ -1.28
VPS4B-201ENST00000238497 OR2C1O95371 312 aa7.05□□□□□ -1.28
VPS4B-201ENST00000238497 HSPB1P04792 205 aaKnown RBP7.05□□□□□ -1.28
VPS4B-201ENST00000238497 GATA2P23769 480 aaPredicted RBP7.05□□□□□ -1.28
VPS4B-201ENST00000238497 CD200P41217 278 aa7.05□□□□□ -1.28
VPS4B-201ENST00000238497 DIAPH2-AS1Q14236 149 aa7.05□□□□□ -1.28
VPS4B-201ENST00000238497 MLANAQ16655 118 aa7.05□□□□□ -1.28
VPS4B-201ENST00000238497 PDZD11Q5EBL8 140 aa7.05□□□□□ -1.28
VPS4B-201ENST00000238497 STUMQ69YW2 141 aa7.05□□□□□ -1.28
VPS4B-201ENST00000238497 SSX7Q7RTT5 188 aa7.05□□□□□ -1.28
VPS4B-201ENST00000238497 RCC1LQ96I51 464 aaKnown RBP7.05□□□□□ -1.28
VPS4B-201ENST00000238497 ANK3Q12955 4377 aaKnown RBP7.05□□□□□ -1.28
VPS4B-201ENST00000238497 KBTBD11-OT1A0A1B0GTJ5 212 aa7.05□□□□□ -1.28
VPS4B-201ENST00000238497 hADV38S2A0JD32 116 aa7.05□□□□□ -1.28
VPS4B-201ENST00000238497 SCAF4O95104 1147 aaKnown RBP7.05□□□□□ -1.28
VPS4B-201ENST00000238497 REG1AP05451 166 aa7.05□□□□□ -1.28
VPS4B-201ENST00000238497 CD5P06127 495 aa7.05□□□□□ -1.28
VPS4B-201ENST00000238497 NQO2P16083 231 aa7.05□□□□□ -1.28
VPS4B-201ENST00000238497 LHFPL4Q7Z7J7 247 aa7.05□□□□□ -1.28
VPS4B-201ENST00000238497 MOB3BQ86TA1 216 aa7.05□□□□□ -1.28
VPS4B-201ENST00000238497 ACY3Q96HD9 319 aa7.05□□□□□ -1.28
VPS4B-201ENST00000238497 DIRC2Q96SL1 478 aa7.05□□□□□ -1.28
VPS4B-201ENST00000238497 IFT22Q9H7X7 185 aa7.05□□□□□ -1.28
VPS4B-201ENST00000238497 RAB29O14966 203 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 CD24P25063 80 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 MIC13Q5XKP0 118 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 WDR61Q9GZS3 305 aaKnown RBP7.04□□□□□ -1.28
VPS4B-201ENST00000238497 NUDT19A8MXV4 375 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 DVL1O14640 695 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 HPRT1P00492 218 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 DLK1P80370 383 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 LRRC10Q5BKY1 277 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 C1orf87Q8N0U7 546 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 OR10W1Q8NGF6 305 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 GAFA1Q96PS6 74 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 C7orf69Q9H7B7 122 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 DOK5Q9P104 306 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 FBN1P35555 2871 aaKnown RBP7.04□□□□□ -1.28
VPS4B-201ENST00000238497 LOC105371242A0A075B767 164 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 PAGE4O60829 102 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 LMO4P61968 165 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 SNRPEP62304 92 aaKnown RBP7.04□□□□□ -1.28
VPS4B-201ENST00000238497 C17orf58Q2M2W7 97 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 C10orf55Q5SWW7 151 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 ACSM6Q6P461 480 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 SPSB3Q6PJ21 355 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 ZNF561Q8N587 486 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 RPP25LQ8N5L8 163 aaKnown RBP7.04□□□□□ -1.28
VPS4B-201ENST00000238497 ZBTB34Q8NCN2 500 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 HARBI1Q96MB7 349 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 JPT1Q9UK76 154 aa7.04□□□□□ -1.28
VPS4B-201ENST00000238497 C1orf196B1AJZ1 125 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 IGKV1D-33P01593 117 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 IGKV1-33P01594 117 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 HBE1P02100 147 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 CD1BP29016 333 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 B2MP61769 119 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 PLGLAQ15195 96 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 OR4A47Q6IF82 309 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 ZNF66Q6ZN08 573 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 LFNGQ8NES3 379 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 OR13D1Q8NGV5 346 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 OR4S2Q8NH73 311 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 TMEM158Q8WZ71 300 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 RAB24Q969Q5 203 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 SMIM7Q9BQ49 75 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 IFI27L2Q9H2X8 130 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 IDI2-AS1Q9NZ38 188 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 TCF19Q9Y242 345 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 J3QR06 171 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 LOXL3P58215 753 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 LRRC75BQ2VPJ9 315 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 ZNF383Q8NA42 475 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 ZNF714Q96N38 554 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 TMEM147Q9BVK8 224 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 SIRT7Q9NRC8 400 aa7.03□□□□□ -1.28
VPS4B-201ENST00000238497 PIGBOS1A0A0B4J2F0 54 aa7.02□□□□□ -1.28
VPS4B-201ENST00000238497 C21orf62-AS1Q17RA5 79 aa7.02□□□□□ -1.28
VPS4B-201ENST00000238497 KRTAP21-3Q3LHN1 58 aa7.02□□□□□ -1.28
VPS4B-201ENST00000238497 MRPL20Q9BYC9 149 aaKnown RBP7.02□□□□□ -1.28
VPS4B-201ENST00000238497 COMMD5Q9GZQ3 224 aa7.02□□□□□ -1.28
VPS4B-201ENST00000238497 TUBG2Q9NRH3 451 aa7.02□□□□□ -1.28
VPS4B-201ENST00000238497 ONECUT1Q9UBC0 465 aa7.02□□□□□ -1.28
VPS4B-201ENST00000238497 HSPB7Q9UBY9 170 aa7.02□□□□□ -1.28
VPS4B-201ENST00000238497 CARHSP1Q9Y2V2 147 aaKnown RBP7.02□□□□□ -1.28
VPS4B-201ENST00000238497 IGHV3OR16-10A0A075B7F0 116 aa7.02□□□□□ -1.29
VPS4B-201ENST00000238497 NPIPB11E5RHQ5 1161 aa7.02□□□□□ -1.29
VPS4B-201ENST00000238497 HTD2P86397 168 aa7.02□□□□□ -1.29
VPS4B-201ENST00000238497 ZNF726P1Q15940 193 aa7.02□□□□□ -1.29
VPS4B-201ENST00000238497 RTL8BQ17RB0 113 aa7.02□□□□□ -1.29
VPS4B-201ENST00000238497 TMEM200BQ69YZ2 307 aa7.02□□□□□ -1.29
VPS4B-201ENST00000238497 OR51G1Q8NGK1 321 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms