RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 HIST1H1AQ02539 215 aaPredicted RBP12.25□□□□□ -0.45
PTPRA-201ENST00000216877 DYSFO75923 2080 aa12.25□□□□□ -0.45
PTPRA-201ENST00000216877 TNRC6AQ8NDV7 1962 aaKnown RBP12.25□□□□□ -0.45
PTPRA-201ENST00000216877 BLACEA4D250 179 aa12.25□□□□□ -0.45
PTPRA-201ENST00000216877 ZNF585BQ52M93 769 aa12.25□□□□□ -0.45
PTPRA-201ENST00000216877 SPACA3Q8IXA5 215 aa12.25□□□□□ -0.45
PTPRA-201ENST00000216877 MAP1LC3CQ9BXW4 147 aa12.25□□□□□ -0.45
PTPRA-201ENST00000216877 WDR82Q6UXN9 313 aa12.25□□□□□ -0.45
PTPRA-201ENST00000216877 TRAV9-1A0A075B6T8 112 aa12.24□□□□□ -0.45
PTPRA-201ENST00000216877 PRR19A6NJB7 356 aa12.24□□□□□ -0.45
PTPRA-201ENST00000216877 C5orf67F2Z3F1 127 aa12.24□□□□□ -0.45
PTPRA-201ENST00000216877 SYNGR1O43759 233 aa12.24□□□□□ -0.45
PTPRA-201ENST00000216877 SRSF7Q16629 238 aaKnown RBP eCLIP12.24□□□□□ -0.45
PTPRA-201ENST00000216877 PHF7Q9BWX1 381 aaPredicted RBP12.24□□□□□ -0.45
PTPRA-201ENST00000216877 PPIAL4EA0A075B759 164 aa12.24□□□□□ -0.45
PTPRA-201ENST00000216877 PPIAL4FP0DN26 164 aa12.24□□□□□ -0.45
PTPRA-201ENST00000216877 FABP2P12104 132 aa12.24□□□□□ -0.45
PTPRA-201ENST00000216877 OR1D5P58170 312 aa12.24□□□□□ -0.45
PTPRA-201ENST00000216877 STRADBQ9C0K7 418 aa12.24□□□□□ -0.45
PTPRA-201ENST00000216877 OBP2AQ9NY56 170 aa12.24□□□□□ -0.45
PTPRA-201ENST00000216877 SYS1-DBNDD2H3BUS1 97 aa12.24□□□□□ -0.45
PTPRA-201ENST00000216877 DRAM1Q8N682 238 aa12.24□□□□□ -0.45
PTPRA-201ENST00000216877 FAM168AQ92567 244 aa12.24□□□□□ -0.45
PTPRA-201ENST00000216877 J3QR89 54 aa12.23□□□□□ -0.45
PTPRA-201ENST00000216877 LAMTOR5O43504 91 aa12.23□□□□□ -0.45
PTPRA-201ENST00000216877 HBZP02008 142 aa12.23□□□□□ -0.45
PTPRA-201ENST00000216877 KIR3DS1Q14943 382 aa12.23□□□□□ -0.45
PTPRA-201ENST00000216877 FAM216AQ8WUB2 273 aa12.23□□□□□ -0.45
PTPRA-201ENST00000216877 PRDM6Q9NQX0 595 aa12.23□□□□□ -0.45
PTPRA-201ENST00000216877 TNFSF15O95150 251 aa12.23□□□□□ -0.45
PTPRA-201ENST00000216877 CEACAM16Q2WEN9 425 aa12.23□□□□□ -0.45
PTPRA-201ENST00000216877 MRPL21Q7Z2W9 205 aaKnown RBP12.23□□□□□ -0.45
PTPRA-201ENST00000216877 ZNF48Q96MX3 618 aaPredicted RBP12.23□□□□□ -0.45
PTPRA-201ENST00000216877 COMMD5Q9GZQ3 224 aa12.23□□□□□ -0.45
PTPRA-201ENST00000216877 LAMA1P25391 3075 aa12.23□□□□□ -0.45
PTPRA-201ENST00000216877 ADAMTS9Q9P2N4 1935 aa12.23□□□□□ -0.45
PTPRA-201ENST00000216877 A0A0G2JMM0 328 aa12.23□□□□□ -0.45
PTPRA-201ENST00000216877 A0A1W2PPB8 328 aa12.23□□□□□ -0.45
PTPRA-201ENST00000216877 LRRC30A6NM36 301 aa12.23□□□□□ -0.45
PTPRA-201ENST00000216877 KIR3DP1A8MWS1 328 aa12.23□□□□□ -0.45
PTPRA-201ENST00000216877 STAG3L3P0CL85 134 aa12.23□□□□□ -0.45
PTPRA-201ENST00000216877 FAM53AQ6NSI3 398 aaPredicted RBP12.23□□□□□ -0.45
PTPRA-201ENST00000216877 SPSB4Q96A44 273 aa12.23□□□□□ -0.45
PTPRA-201ENST00000216877 JMJD8Q96S16 334 aa12.23□□□□□ -0.45
PTPRA-201ENST00000216877 DEFB108AA8MXU0 73 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 IGHV3-13P01766 116 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 IGHV3-7P01780 117 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 KIR2DL1P43626 348 aaPredicted RBP12.22□□□□□ -0.45
PTPRA-201ENST00000216877 PCSK4Q6UW60 755 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 KCNIP1Q9NZI2 227 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 SIT1Q9Y3P8 196 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 SAA2-SAA4A0A096LPE2 208 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 KIR2DS5A0A0G2JLQ3 304 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 A0A0G2JNG1 304 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 KIR2DS3K7RE56 304 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 CCR5P51681 352 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 KIR2DS5Q14953 304 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 ABHD12Q8N2K0 398 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 BLNKQ8WV28 456 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 C10orf35Q96D05 121 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 LINC00479Q96M42 142 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 GEMIN7Q9H840 131 aaKnown RBP12.22□□□□□ -0.45
PTPRA-201ENST00000216877 CHODLQ9H9P2 273 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 GAGE12HA6NDE8 117 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 C2orf70A6NJV1 201 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 HLA-DRB1P01911 266 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 RAB31Q13636 194 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 GAB4Q2WGN9 574 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 COX19Q49B96 90 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 OR8A1Q8NGG7 326 aa12.22□□□□□ -0.45
PTPRA-201ENST00000216877 HSD17B10Q99714 261 aaKnown RBP12.22□□□□□ -0.45
PTPRA-201ENST00000216877 AKIRIN1Q9H9L7 192 aaPredicted RBP12.22□□□□□ -0.45
PTPRA-201ENST00000216877 FOXE3Q13461 319 aa12.21□□□□□ -0.45
PTPRA-201ENST00000216877 TMEM177Q53S58 311 aa12.21□□□□□ -0.45
PTPRA-201ENST00000216877 K7EP34 96 aa12.21□□□□□ -0.45
PTPRA-201ENST00000216877 PTGDSP41222 190 aa12.21□□□□□ -0.45
PTPRA-201ENST00000216877 NMUP48645 174 aa12.21□□□□□ -0.45
PTPRA-201ENST00000216877 TBR1Q16650 682 aa12.21□□□□□ -0.45
PTPRA-201ENST00000216877 LYSMD4Q5XG99 296 aa12.21□□□□□ -0.45
PTPRA-201ENST00000216877 RFESDQ8TAC1 157 aa12.21□□□□□ -0.45
PTPRA-201ENST00000216877 PLSCR4Q9NRQ2 329 aa12.21□□□□□ -0.45
PTPRA-201ENST00000216877 CUL9Q8IWT3 2517 aa12.21□□□□□ -0.45
PTPRA-201ENST00000216877 SPENQ96T58 3664 aaKnown RBP12.21□□□□□ -0.46
PTPRA-201ENST00000216877 IGHV3-43A0A0B4J1X8 118 aa12.21□□□□□ -0.46
PTPRA-201ENST00000216877 A0A1W2PQF6 199 aa12.21□□□□□ -0.46
PTPRA-201ENST00000216877 CHEK1O14757 476 aa12.21□□□□□ -0.46
PTPRA-201ENST00000216877 IGHV3-43DP0DP04 118 aa12.21□□□□□ -0.46
PTPRA-201ENST00000216877 GCSHP23434 173 aa12.21□□□□□ -0.46
PTPRA-201ENST00000216877 RTL8BQ17RB0 113 aa12.21□□□□□ -0.46
PTPRA-201ENST00000216877 OR2Z1Q8NG97 314 aa12.21□□□□□ -0.46
PTPRA-201ENST00000216877 NPFFR1Q9GZQ6 430 aa12.21□□□□□ -0.46
PTPRA-201ENST00000216877 MS4A5Q9H3V2 200 aa12.21□□□□□ -0.46
PTPRA-201ENST00000216877 SS18L2Q9UHA2 77 aa12.21□□□□□ -0.46
PTPRA-201ENST00000216877 SERTM2A0A1B0GWG4 89 aa12.2□□□□□ -0.46
PTPRA-201ENST00000216877 A0A1W2PRE2 83 aa12.2□□□□□ -0.46
PTPRA-201ENST00000216877 TNFSF11O14788 317 aa12.2□□□□□ -0.46
PTPRA-201ENST00000216877 SRFP11831 508 aa12.2□□□□□ -0.46
PTPRA-201ENST00000216877 IGFBP2P18065 325 aa12.2□□□□□ -0.46
PTPRA-201ENST00000216877 PRAMEF5Q5TYX0 476 aa12.2□□□□□ -0.46
PTPRA-201ENST00000216877 PRAMEF6Q5VXH4 476 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms