RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 OR4P4Q8NGL7 312 aa8.76□□□□□ -1.01
USP28-201ENST00000003302 ITLN1Q8WWA0 313 aa8.76□□□□□ -1.01
USP28-201ENST00000003302 ZCCHC14Q8WYQ9 949 aaKnown RBP8.76□□□□□ -1.01
USP28-201ENST00000003302 UHRF2Q96PU4 802 aa8.76□□□□□ -1.01
USP28-201ENST00000003302 OR5B12Q96R08 314 aa8.76□□□□□ -1.01
USP28-201ENST00000003302 CTDSP1Q9GZU7 261 aa8.76□□□□□ -1.01
USP28-201ENST00000003302 TIMM9Q9Y5J7 89 aa8.76□□□□□ -1.01
USP28-201ENST00000003302 ANKHD1Q8IWZ3 2542 aaKnown RBP8.76□□□□□ -1.01
USP28-201ENST00000003302 IL6RP08887 468 aaPredicted RBP8.75□□□□□ -1.01
USP28-201ENST00000003302 TMEM164Q5U3C3 297 aa8.75□□□□□ -1.01
USP28-201ENST00000003302 LSM4Q9Y4Z0 139 aaKnown RBP8.75□□□□□ -1.01
USP28-201ENST00000003302 SERF1AO75920 110 aa8.75□□□□□ -1.01
USP28-201ENST00000003302 ZNF718Q3SXZ3 478 aa8.75□□□□□ -1.01
USP28-201ENST00000003302 OR4A47Q6IF82 309 aa8.75□□□□□ -1.01
USP28-201ENST00000003302 ZNF474Q6S9Z5 364 aaPredicted RBP8.75□□□□□ -1.01
USP28-201ENST00000003302 ZNF709Q8N972 641 aa8.75□□□□□ -1.01
USP28-201ENST00000003302 DDB2Q92466 427 aa8.75□□□□□ -1.01
USP28-201ENST00000003302 PARD6GQ9BYG4 376 aaPredicted RBP8.75□□□□□ -1.01
USP28-201ENST00000003302 PLAUP00749 431 aa8.75□□□□□ -1.01
USP28-201ENST00000003302 MSMO1Q15800 293 aa8.75□□□□□ -1.01
USP28-201ENST00000003302 Q6ZVH6 145 aa8.75□□□□□ -1.01
USP28-201ENST00000003302 NANOS1Q8WY41 292 aaKnown RBP8.75□□□□□ -1.01
USP28-201ENST00000003302 A0A1W2PPV4 95 aa8.75□□□□□ -1.01
USP28-201ENST00000003302 SCGB1D1O95968 90 aa8.75□□□□□ -1.01
USP28-201ENST00000003302 IFNA1P01562 189 aa8.75□□□□□ -1.01
USP28-201ENST00000003302 STAG3L2P0CL84 134 aa8.75□□□□□ -1.01
USP28-201ENST00000003302 STAG3L3P0CL85 134 aa8.75□□□□□ -1.01
USP28-201ENST00000003302 CRYBB3P26998 211 aa8.75□□□□□ -1.01
USP28-201ENST00000003302 CATR1Q13166 79 aa8.75□□□□□ -1.01
USP28-201ENST00000003302 MAJINQ3KP22 176 aa8.75□□□□□ -1.01
USP28-201ENST00000003302 LYG1Q8N1E2 194 aa8.75□□□□□ -1.01
USP28-201ENST00000003302 ASCL2Q99929 193 aa8.75□□□□□ -1.01
USP28-201ENST00000003302 COMPP49747 757 aaPredicted RBP8.74□□□□□ -1.01
USP28-201ENST00000003302 PLA2G2CQ5R387 149 aa8.74□□□□□ -1.01
USP28-201ENST00000003302 RITA1Q96K30 269 aa8.74□□□□□ -1.01
USP28-201ENST00000003302 HSD17B10Q99714 261 aaKnown RBP8.74□□□□□ -1.01
USP28-201ENST00000003302 SSBP3Q9BWW4 388 aaPredicted RBP8.74□□□□□ -1.01
USP28-201ENST00000003302 CXXC4Q9H2H0 198 aa8.74□□□□□ -1.01
USP28-201ENST00000003302 ZNF71Q9NQZ8 489 aaPredicted RBP8.74□□□□□ -1.01
USP28-201ENST00000003302 ABI3Q9P2A4 366 aa8.74□□□□□ -1.01
USP28-201ENST00000003302 PTPRQQ9UMZ3 2332 aa8.74□□□□□ -1.01
USP28-201ENST00000003302 ACSF3Q4G176 576 aaPredicted RBP8.74□□□□□ -1.01
USP28-201ENST00000003302 RNASEH2CQ8TDP1 164 aaKnown RBP8.74□□□□□ -1.01
USP28-201ENST00000003302 CCL13Q99616 98 aa8.74□□□□□ -1.01
USP28-201ENST00000003302 CENPEQ02224 2701 aa8.74□□□□□ -1.01
USP28-201ENST00000003302 GGTLC3B5MD39 225 aa8.74□□□□□ -1.01
USP28-201ENST00000003302 TSTD3H0UI37 97 aa8.74□□□□□ -1.01
USP28-201ENST00000003302 LINC00869P0C866 280 aa8.74□□□□□ -1.01
USP28-201ENST00000003302 IER3P46695 156 aa8.74□□□□□ -1.01
USP28-201ENST00000003302 OR5R1Q8NH85 324 aa8.74□□□□□ -1.01
USP28-201ENST00000003302 LRFN3Q9BTN0 628 aa8.74□□□□□ -1.01
USP28-201ENST00000003302 SRRM5B3KS81 715 aa8.74□□□□□ -1.01
USP28-201ENST00000003302 M0R1B8 84 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 CCL3L1P16619 93 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 RPL29P47914 159 aaKnown RBP8.73□□□□□ -1.01
USP28-201ENST00000003302 FAM27E3Q08E93 113 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 TCF24Q7RTU0 167 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 OR8I2Q8N0Y5 310 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 OR4A16Q8NH70 328 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 DIRC2Q96SL1 478 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 ZPBPQ9BS86 351 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 PAM16Q9Y3D7 125 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 ITPR1Q14643 2758 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 A0A1W2PN81 502 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 H3BTX0 84 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 YPEL1O60688 119 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 TFPI2P48307 235 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 OR2T6Q8NHC8 308 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 YPEL2Q96QA6 119 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 FAM103A1Q9BTL3 118 aaKnown RBP8.73□□□□□ -1.01
USP28-201ENST00000003302 CALYQ9NYX4 217 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 IDI2-AS1Q9NZ38 188 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 TYMSP04818 313 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 GCHFRP30047 84 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 RAB4BP61018 213 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 CCL8P80075 99 aa8.73□□□□□ -1.01
USP28-201ENST00000003302 PDLIM3Q53GG5 364 aaPredicted RBP8.73□□□□□ -1.01
USP28-201ENST00000003302 TRAV34A0A0B4J273 112 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 MKRN2OSH3BPM6 223 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 CGB3P0DN86 165 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 CGB7P0DN87 165 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 SMIM21Q3B7S5 101 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 FAM19A2Q8N3H0 131 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 NDUFAF3Q9BU61 184 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 TPSG1Q9NRR2 321 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 RNF212BA8MTL3 300 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 IGLV1-44P01699 117 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 ACOT6Q3I5F7 207 aaPredicted RBP8.72□□□□□ -1.01
USP28-201ENST00000003302 INO80CQ6PI98 192 aaPredicted RBP8.72□□□□□ -1.01
USP28-201ENST00000003302 ATOH7Q8N100 152 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 DEFB124Q8NES8 71 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 TBX15Q96SF7 602 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 TMEM265A0A087WTH1 108 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 IGHV3-21A0A0B4J1V1 117 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 REG1AP05451 166 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 PYYP10082 97 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 PQLC2Q6ZP29 291 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 ZANQ9Y493 2812 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 TMPRSS2O15393 492 aa8.72□□□□□ -1.01
USP28-201ENST00000003302 MRPL49Q13405 166 aaKnown RBP8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms