RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 GSX2Q9BZM3 304 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 OR51M1Q9H341 326 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 TMEM30AQ9NV96 361 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 EFNA4P52798 201 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 SERF2P84101 59 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 EIF4EBP2Q13542 120 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-217ENST00000637988 BSXQ3C1V8 233 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 MBNL2Q5VZF2 373 aaKnown RBP5.24□□□□□ -1.57
SCN1A-217ENST00000637988 MRM1Q6IN84 353 aaKnown RBP5.24□□□□□ -1.57
SCN1A-217ENST00000637988 ZNF826PQ6ZT77 177 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 FAM90A1Q86YD7 464 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 DUSP21Q9H596 190 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 PTPRDP23468 1912 aa5.24□□□□□ -1.57
SCN1A-217ENST00000637988 SMIM18P0DKX4 95 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 TDGF1P3P51864 188 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 C12orf73Q69YU5 71 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 ALG14Q96F25 216 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 C21orf62Q9NYP8 219 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 TRAV39A0A0B4J263 110 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 TCRBV5S1A1TA0A578 114 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 C17orf100A8MU93 164 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 MAVSQ7Z434 540 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 CELF2-AS1Q8N7Q2 184 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 PILRAQ9UKJ1 303 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 HRKO00198 91 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 RPS11P62280 158 aaKnown RBP eCLIP5.23□□□□□ -1.57
SCN1A-217ENST00000637988 S100A7L2Q5SY68 101 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-217ENST00000637988 DLX4Q92988 240 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-217ENST00000637988 TXNDC17Q9BRA2 123 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 HELZP42694 1942 aaKnown RBP5.23□□□□□ -1.57
SCN1A-217ENST00000637988 ASPDHA6ND91 283 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 IBA57Q5T440 356 aaKnown RBP5.23□□□□□ -1.57
SCN1A-217ENST00000637988 C10orf111Q8N326 155 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 SFRP2Q96HF1 295 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 CST9LQ9H4G1 147 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 FRRS1LQ9P0K9 344 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 MRM2Q9UI43 246 aaKnown RBP5.23□□□□□ -1.57
SCN1A-217ENST00000637988 TRAV14DV4A0A0A6YYC5 116 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 ADARB2-AS1A8MUL3 147 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 SOCS1O15524 211 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 TNFSF13O75888 250 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 MPC2O95563 127 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 SUCLG1P53597 346 aaKnown RBP5.23□□□□□ -1.57
SCN1A-217ENST00000637988 ERVS71-1P61550 626 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 RPL32P62910 135 aaKnown RBP5.23□□□□□ -1.57
SCN1A-217ENST00000637988 KLHL30-AS1Q8NEE0 82 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 LINC00470Q9BZP3 86 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 IGHV3-66A0A0C4DH42 116 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 FBLL1A6NHQ2 334 aaKnown RBP5.23□□□□□ -1.57
SCN1A-217ENST00000637988 EPOPA6NHQ4 379 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 FOXS1O43638 330 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 IGHV3-23P01764 117 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 TTRP02766 147 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 HOXA6P31267 233 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 HSPE1P61604 102 aaKnown RBP5.23□□□□□ -1.57
SCN1A-217ENST00000637988 COL5A1-AS1Q5SY13 56 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 LCN12Q6JVE5 192 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 PHYHIPLQ96FC7 376 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 NIT2Q9NQR4 276 aa5.23□□□□□ -1.57
SCN1A-217ENST00000637988 CXorf65A6NEN9 183 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 TSPAN2O60636 221 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 APOMO95445 188 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 CA2P00918 260 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 CD7P09564 240 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 FLRT3Q9NZU0 649 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 TRBV20OR9-2A0A075B6H5 130 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 MARCH11A6NNE9 402 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 NDUFS8O00217 210 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 NBR2O15453 112 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 IGFBP6P24592 240 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-217ENST00000637988 ZNF488Q96MN9 340 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 IL18BPO95998 194 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 MMP16P51512 607 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 GVQW1Q8N7I0 195 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 FOXA2Q9Y261 457 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-217ENST00000637988 ANAPC1Q9H1A4 1944 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 NPIPB4C9JG80 1138 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 TSPAN13O95857 204 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 PGLYRP4Q96LB8 373 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 FOXC2Q99958 501 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 CHCHD5Q9BSY4 110 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 OR5AC2Q9NZP5 309 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 NOTCH3Q9UM47 2321 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 DIRC3C9JPN6 131 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 M0R381 172 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 PAGE4O60829 102 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 IER3P46695 156 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 Q5PR19 223 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 TMEM170BQ5T4T1 132 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 FAM89BQ8N5H3 189 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 TAF15Q92804 592 aaKnown RBP eCLIP5.22□□□□□ -1.57
SCN1A-217ENST00000637988 ZNF385DQ9H6B1 395 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 PSPNO60542 156 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 LBHQ53QV2 105 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-217ENST00000637988 SLC7A5P1Q8MH63 180 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 TMEM252Q8N6L7 170 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 OR10AG1Q8NH19 301 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 KLK15Q9H2R5 256 aa5.22□□□□□ -1.57
SCN1A-217ENST00000637988 MSRB2Q9Y3D2 182 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms