RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 FAM90A18PA6NE21 464 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 FAM90A16PA6NEW6 464 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 FAM90A20PA6NIJ5 464 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 FAM90A8PA6NJQ4 464 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 FAM90A7PA6NKC0 464 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 MARCH11A6NNE9 402 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 FAM90A22PA8MWA6 464 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 FAM90A12PA8MX19 464 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 FAM90A5PA8MXJ8 464 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 FAM90A23PA8MXZ1 464 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 FAM90A15PP0C7V4 464 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 FAM90A13PP0C7W8 464 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 FAM90A14PP0C7W9 464 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 FAM90A24PP0C7X0 464 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 SMIM6P0DI80 62 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 MGAT2Q10469 447 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 ICAM4Q14773 271 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 CYB5R2Q6BCY4 276 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 CADP27708 2225 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 TRAV12-3A0A0B4J271 114 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 SMIM18P0DKX4 95 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 MUC1P15941 1255 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-209ENST00000635750 SRSF6Q13247 344 aaKnown RBP4.75□□□□□ -1.65
SCN1A-209ENST00000635750 PSMG4Q5JS54 123 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 MIC13Q5XKP0 118 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 HIST1H2BAQ96A08 127 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 FMC1Q96HJ9 113 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 CHCHD5Q9BSY4 110 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 NPCDR1Q9BY65 106 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 PILRBQ9UKJ0 227 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 TRGV11A0A075B6L2 103 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 IGHV3-49A0A0A0MS15 119 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 TRAV24A0A0B4J272 114 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 INSL4Q14641 139 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 CYP2G1PQ6ZSU1 146 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 ZNF826PQ6ZT77 177 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 BIVMQ86UB2 503 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 STPG2Q8N412 459 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 MS4A3Q96HJ5 214 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 CITED2Q99967 270 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-209ENST00000635750 MARVELD1Q9BSK0 173 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 ST20Q9HBF5 79 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 NDUFA3O95167 84 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 NTN1O95631 604 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 FGFRL1Q8N441 504 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 MS4A6AQ9H2W1 248 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 FOXA2Q9Y261 457 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-209ENST00000635750 RBBP6Q7Z6E9 1792 aaKnown RBP4.75□□□□□ -1.65
SCN1A-209ENST00000635750 IGHV3-35A0A0C4DH35 117 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 C7orf77A4D0Y5 90 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-209ENST00000635750 SCTP09683 121 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 MEF2BQ02080 365 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-209ENST00000635750 TNFRSF9Q07011 255 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 IGSF11Q5DX21 431 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 VN1R4Q7Z5H5 301 aa4.75□□□□□ -1.65
SCN1A-209ENST00000635750 PARD6GQ9BYG4 376 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-209ENST00000635750 ARFGEF3Q5TH69 2177 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 ABCA4P78363 2273 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 A0A0J9YW62 118 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 SAP30O75446 220 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 EFEMP2O95967 443 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 MOSP00540 346 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 SPNP16150 400 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 TEX45Q8NA69 505 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 TAF15Q92804 592 aaKnown RBP eCLIP4.74□□□□□ -1.65
SCN1A-209ENST00000635750 NRN1Q9NPD7 142 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 PLNP26678 52 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 GLRXP35754 106 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 BSPH1Q075Z2 132 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 SNAI3Q3KNW1 292 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 DMKNQ6E0U4 476 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-209ENST00000635750 RNASE6Q93091 150 aaKnown RBP4.74□□□□□ -1.65
SCN1A-209ENST00000635750 SDHCQ99643 169 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-209ENST00000635750 C21orf62Q9NYP8 219 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 GPR132Q9UNW8 380 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 LINC00158P58513 81 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 CSRP2Q16527 193 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 MZB1Q8WU39 189 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 ALX4Q9H161 411 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-209ENST00000635750 TGIF2-C20orf24A0A0A6YYL0 155 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 A0A1B0GW15 77 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 TCRBV5S1A1TA0A578 114 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 APOMO95445 188 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 TMEM50AO95807 157 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 TOMM40O96008 361 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 MMP16P51512 607 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 EFNB1P98172 346 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 ZNF600Q6ZNG1 722 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 CYB561D1Q8N8Q1 229 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 LEAP2Q969E1 77 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 DLEC1Q9Y238 1755 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 CDC42EP2O14613 210 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 CGB3P0DN86 165 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 UNC119Q13432 240 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 MORN3Q6PF18 240 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-209ENST00000635750 TMEM222Q9H0R3 208 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 DLL3Q9NYJ7 618 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 RNF114Q9Y508 228 aa4.74□□□□□ -1.65
SCN1A-209ENST00000635750 XIRP1Q702N8 1843 aaKnown RBP4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms