RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 COMMD5Q9GZQ3 224 aa16.09■□□□□ 0.17
CLN3-240ENST00000631023 C14orf166Q9Y224 244 aaKnown RBP16.09■□□□□ 0.17
CLN3-240ENST00000631023 DUS4LO95620 317 aaKnown RBP16.08■□□□□ 0.16
CLN3-240ENST00000631023 SERPINE2P07093 398 aa16.08■□□□□ 0.16
CLN3-240ENST00000631023 IL6RP08887 468 aaPredicted RBP16.08■□□□□ 0.16
CLN3-240ENST00000631023 FAUP35544 74 aaKnown RBP16.08■□□□□ 0.16
CLN3-240ENST00000631023 TTC9CQ8N5M4 171 aa16.08■□□□□ 0.16
CLN3-240ENST00000631023 OR1N2Q8NGR9 330 aa16.08■□□□□ 0.16
CLN3-240ENST00000631023 MCUBQ9NWR8 336 aa16.08■□□□□ 0.16
CLN3-240ENST00000631023 SLC2A8Q9NY64 477 aa16.08■□□□□ 0.16
CLN3-240ENST00000631023 C13orf42A0A1B0GVH6 325 aa16.07■□□□□ 0.16
CLN3-240ENST00000631023 CTSDP07339 412 aaPredicted RBP16.07■□□□□ 0.16
CLN3-240ENST00000631023 RPA2P15927 270 aa16.07■□□□□ 0.16
CLN3-240ENST00000631023 G6PCP35575 357 aa16.07■□□□□ 0.16
CLN3-240ENST00000631023 RAB25P57735 213 aa16.07■□□□□ 0.16
CLN3-240ENST00000631023 ZNF79Q15937 498 aa16.07■□□□□ 0.16
CLN3-240ENST00000631023 FOXB2Q5VYV0 432 aa16.07■□□□□ 0.16
CLN3-240ENST00000631023 ADAD2Q8NCV1 583 aaKnown RBP16.07■□□□□ 0.16
CLN3-240ENST00000631023 OR51S1Q8NGJ8 323 aa16.07■□□□□ 0.16
CLN3-240ENST00000631023 DPF1Q92782 380 aa16.07■□□□□ 0.16
CLN3-240ENST00000631023 G3V4G9 280 aa16.06■□□□□ 0.16
CLN3-240ENST00000631023 H0Y980 276 aa16.06■□□□□ 0.16
CLN3-240ENST00000631023 SNAPC5O75971 98 aa16.06■□□□□ 0.16
CLN3-240ENST00000631023 LGALS1P09382 135 aaKnown RBP16.06■□□□□ 0.16
CLN3-240ENST00000631023 OR8U8P0C7N1 319 aa16.06■□□□□ 0.16
CLN3-240ENST00000631023 ZNF616Q08AN1 781 aa16.06■□□□□ 0.16
CLN3-240ENST00000631023 SAMD5Q5TGI4 173 aa16.06■□□□□ 0.16
CLN3-240ENST00000631023 C1QL4Q86Z23 238 aa16.06■□□□□ 0.16
CLN3-240ENST00000631023 TOMM5Q8N4H5 51 aa16.06■□□□□ 0.16
CLN3-240ENST00000631023 SCGB3A2Q96PL1 93 aa16.06■□□□□ 0.16
CLN3-240ENST00000631023 MCRIP2Q9BUT9 160 aaKnown RBP16.06■□□□□ 0.16
CLN3-240ENST00000631023 TRAV3A0A0B4J244 114 aa16.05■□□□□ 0.16
CLN3-240ENST00000631023 HMX3A6NHT5 357 aa16.05■□□□□ 0.16
CLN3-240ENST00000631023 B3GALNT1O75752 331 aa16.05■□□□□ 0.16
CLN3-240ENST00000631023 IGLL1P15814 213 aa16.05■□□□□ 0.16
CLN3-240ENST00000631023 OXLD1Q5BKU9 147 aa16.05■□□□□ 0.16
CLN3-240ENST00000631023 DEDD2Q8WXF8 326 aa16.05■□□□□ 0.16
CLN3-240ENST00000631023 TRIM63Q969Q1 353 aa16.05■□□□□ 0.16
CLN3-240ENST00000631023 MRGPRFQ96AM1 343 aa16.05■□□□□ 0.16
CLN3-240ENST00000631023 USMG5Q96IX5 58 aa16.05■□□□□ 0.16
CLN3-240ENST00000631023 TSC22D3Q99576 134 aa16.05■□□□□ 0.16
CLN3-240ENST00000631023 GPR61Q9BZJ8 451 aa16.05■□□□□ 0.16
CLN3-240ENST00000631023 ZNF257Q9Y2Q1 563 aa16.05■□□□□ 0.16
CLN3-240ENST00000631023 C3orf85A0A1B0GTC6 90 aa16.04■□□□□ 0.16
CLN3-240ENST00000631023 TEX22C9J3V5 150 aa16.04■□□□□ 0.16
CLN3-240ENST00000631023 E7EUB6 86 aa16.04■□□□□ 0.16
CLN3-240ENST00000631023 IGHV3-11P01762 117 aa16.04■□□□□ 0.16
CLN3-240ENST00000631023 OR2B8PP59922 312 aa16.04■□□□□ 0.16
CLN3-240ENST00000631023 FHL3Q13643 280 aa16.04■□□□□ 0.16
CLN3-240ENST00000631023 FKBP11Q9NYL4 201 aa16.04■□□□□ 0.16
CLN3-240ENST00000631023 NPIPB5A8MRT5 1133 aa16.04■□□□□ 0.16
CLN3-240ENST00000631023 ATG12O94817 140 aa16.04■□□□□ 0.16
CLN3-240ENST00000631023 DHFRP00374 187 aa16.04■□□□□ 0.16
CLN3-240ENST00000631023 DEFA6Q01524 100 aa16.04■□□□□ 0.16
CLN3-240ENST00000631023 KLF9Q13886 244 aaPredicted RBP16.04■□□□□ 0.16
CLN3-240ENST00000631023 H2BFWTQ7Z2G1 175 aa16.04■□□□□ 0.16
CLN3-240ENST00000631023 SEC22AQ96IW7 307 aa16.04■□□□□ 0.16
CLN3-240ENST00000631023 SRSF8Q9BRL6 282 aaKnown RBP16.04■□□□□ 0.16
CLN3-240ENST00000631023 PRNDQ9UKY0 176 aa16.04■□□□□ 0.16
CLN3-240ENST00000631023 GPR132Q9UNW8 380 aa16.04■□□□□ 0.16
CLN3-240ENST00000631023 TEX13DA0A0J9YY54 714 aaPredicted RBP16.03■□□□□ 0.16
CLN3-240ENST00000631023 MYOD1P15172 320 aa16.03■□□□□ 0.16
CLN3-240ENST00000631023 THOC7Q6I9Y2 204 aaKnown RBP16.03■□□□□ 0.16
CLN3-240ENST00000631023 GDPD1Q8N9F7 314 aa16.03■□□□□ 0.16
CLN3-240ENST00000631023 OR1L8Q8NGR8 309 aa16.03■□□□□ 0.16
CLN3-240ENST00000631023 TP53RKQ96S44 253 aa16.03■□□□□ 0.16
CLN3-240ENST00000631023 RTBDNQ9BSG5 229 aaPredicted RBP16.03■□□□□ 0.16
CLN3-240ENST00000631023 QTRT1Q9BXR0 403 aaKnown RBP16.03■□□□□ 0.16
CLN3-240ENST00000631023 SRRQ9GZT4 340 aa16.03■□□□□ 0.16
CLN3-240ENST00000631023 ALX4Q9H161 411 aaPredicted RBP16.03■□□□□ 0.16
CLN3-240ENST00000631023 A0A1B0GW64 132 aa16.02■□□□□ 0.16
CLN3-240ENST00000631023 FAM223BA6NKX1 122 aa16.02■□□□□ 0.16
CLN3-240ENST00000631023 LINC01619G3V211 115 aa16.02■□□□□ 0.16
CLN3-240ENST00000631023 HSPB1P04792 205 aaKnown RBP16.02■□□□□ 0.16
CLN3-240ENST00000631023 BEAN1Q3B7T3 259 aa16.02■□□□□ 0.16
CLN3-240ENST00000631023 FAM223AQ8IWN6 122 aa16.02■□□□□ 0.16
CLN3-240ENST00000631023 C5orf66Q9H5L9 145 aa16.02■□□□□ 0.16
CLN3-240ENST00000631023 TEX50A0A1B0GTY4 177 aa16.01■□□□□ 0.15
CLN3-240ENST00000631023 IGKV1-39P01597 117 aa16.01■□□□□ 0.15
CLN3-240ENST00000631023 IGKV1D-39P04432 117 aa16.01■□□□□ 0.15
CLN3-240ENST00000631023 CRYGCP07315 174 aa16.01■□□□□ 0.15
CLN3-240ENST00000631023 TRAPPC2P0DI81 140 aa16.01■□□□□ 0.15
CLN3-240ENST00000631023 TRAPPC2BP0DI82 140 aa16.01■□□□□ 0.15
CLN3-240ENST00000631023 PSMB6P28072 239 aa16.01■□□□□ 0.15
CLN3-240ENST00000631023 INPP1P49441 399 aa16.01■□□□□ 0.15
CLN3-240ENST00000631023 RHOGP84095 191 aa16.01■□□□□ 0.15
CLN3-240ENST00000631023 TRIM16LQ309B1 348 aa16.01■□□□□ 0.15
CLN3-240ENST00000631023 KPRPQ5T749 579 aaPredicted RBP16.01■□□□□ 0.15
CLN3-240ENST00000631023 HSD17B13Q7Z5P4 300 aaPredicted RBP16.01■□□□□ 0.15
CLN3-240ENST00000631023 NECAP1Q8NC96 275 aa16.01■□□□□ 0.15
CLN3-240ENST00000631023 OR4A16Q8NH70 328 aa16.01■□□□□ 0.15
CLN3-240ENST00000631023 RANGRFQ9HD47 186 aaPredicted RBP16.01■□□□□ 0.15
CLN3-240ENST00000631023 NSG2Q9Y328 171 aa16.01■□□□□ 0.15
CLN3-240ENST00000631023 OR51B2Q9Y5P1 312 aa16.01■□□□□ 0.15
CLN3-240ENST00000631023 TRBV9A0A0B4J1U6 114 aa16■□□□□ 0.15
CLN3-240ENST00000631023 PRH1P02810 166 aa16■□□□□ 0.15
CLN3-240ENST00000631023 DEFA4P12838 97 aa16■□□□□ 0.15
CLN3-240ENST00000631023 AREGP15514 252 aa16■□□□□ 0.15
CLN3-240ENST00000631023 UCP1P25874 307 aa16■□□□□ 0.15
CLN3-240ENST00000631023 ATP5G2Q06055 141 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms