RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 CIDEAO60543 219 aa11.85□□□□□ -0.51
CPSF1-212ENST00000616140 PPIAL4GP0DN37 164 aa11.85□□□□□ -0.51
CPSF1-212ENST00000616140 OTX1P32242 354 aaPredicted RBP11.85□□□□□ -0.51
CPSF1-212ENST00000616140 CLDN18P56856 261 aa11.85□□□□□ -0.51
CPSF1-212ENST00000616140 SPATA45Q537H7 98 aa11.85□□□□□ -0.51
CPSF1-212ENST00000616140 SRSF12Q8WXF0 261 aaKnown RBP11.85□□□□□ -0.51
CPSF1-212ENST00000616140 CBLN4Q9NTU7 201 aa11.85□□□□□ -0.51
CPSF1-212ENST00000616140 CGB1A6NKQ9 187 aa11.85□□□□□ -0.51
CPSF1-212ENST00000616140 KLF7O75840 302 aaPredicted RBP11.85□□□□□ -0.51
CPSF1-212ENST00000616140 CA7P43166 264 aa11.85□□□□□ -0.51
CPSF1-212ENST00000616140 ZNF146Q15072 292 aa11.85□□□□□ -0.51
CPSF1-212ENST00000616140 FAM89BQ8N5H3 189 aa11.85□□□□□ -0.51
CPSF1-212ENST00000616140 NEU1Q99519 415 aa11.85□□□□□ -0.51
CPSF1-212ENST00000616140 SOD3P08294 240 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 PSMB2P49721 201 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 LOXL3P58215 753 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 HERVK_113P61574 105 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 CFHR1Q03591 330 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 LYRM7Q5U5X0 104 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 TMEM186Q96B77 213 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 LYZL4Q96KX0 146 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 VENTXO95231 258 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 MOSP00540 346 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 MAS1LP35410 378 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 TFF3Q07654 80 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 FAM27E3Q08E93 113 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 PMCHL1Q16048 86 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 CDC42EP3Q9UKI2 254 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 ZFP30Q9Y2G7 519 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 DMRT1Q9Y5R6 373 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 IL6RP08887 468 aaPredicted RBP11.84□□□□□ -0.51
CPSF1-212ENST00000616140 UNQ5815/PRO19632Q6UWF5 114 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 C19orf24Q9BVV8 132 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 SPG11Q96JI7 2443 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 PQLC2LA1A4F0 135 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 CELA3BP08861 270 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 SRSF3P84103 164 aaKnown RBP11.84□□□□□ -0.51
CPSF1-212ENST00000616140 TIMM23BQ5SRD1 257 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 PCSK4Q6UW60 755 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 FAM216BQ8N7L0 139 aa11.84□□□□□ -0.51
CPSF1-212ENST00000616140 LOC285556D6RIA3 1793 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 C5orf52A6NGY3 159 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 DNM1P46Q6ZS02 220 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 UQCR10Q9UDW1 63 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 FANCMQ8IYD8 2048 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 EFNA2O43921 213 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 BTF3P20290 206 aaKnown RBP11.83□□□□□ -0.52
CPSF1-212ENST00000616140 GOLT1AQ6ZVE7 132 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 ATOH7Q8N100 152 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 ZNF738Q8NE65 137 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 AP5S1Q9NUS5 200 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 RNF115Q9Y4L5 304 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 TMEM56-RWDD3S4R434 201 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 SCN8AQ9UQD0 1980 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 A0A0A6YYD4 124 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 OR4C46A6NHA9 309 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 FAM106CPP0CH98 169 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 PF4V1P10720 104 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 CCL1P22362 96 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 MFAP4P55083 255 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 FOXA3P55318 350 aaPredicted RBP11.83□□□□□ -0.52
CPSF1-212ENST00000616140 DLX1P56177 255 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 ZNF525Q8N782 197 aa11.83□□□□□ -0.52
CPSF1-212ENST00000616140 LOC102723996A0A087X1L8 192 aa11.82□□□□□ -0.52
CPSF1-212ENST00000616140 SLC17A3O00476 420 aa11.82□□□□□ -0.52
CPSF1-212ENST00000616140 CGAP01215 116 aa11.82□□□□□ -0.52
CPSF1-212ENST00000616140 COMPP49747 757 aaPredicted RBP11.82□□□□□ -0.52
CPSF1-212ENST00000616140 TNFSF10P50591 281 aa11.82□□□□□ -0.52
CPSF1-212ENST00000616140 LRRK1Q38SD2 2015 aa11.82□□□□□ -0.52
CPSF1-212ENST00000616140 TRBV6-7A0A0A0MS04 114 aa11.82□□□□□ -0.52
CPSF1-212ENST00000616140 LOC105371267A0A1B0GV96 52 aa11.82□□□□□ -0.52
CPSF1-212ENST00000616140 UCNP55089 124 aa11.82□□□□□ -0.52
CPSF1-212ENST00000616140 PLPPR1Q8TBJ4 325 aa11.82□□□□□ -0.52
CPSF1-212ENST00000616140 ZCCHC14Q8WYQ9 949 aaKnown RBP11.82□□□□□ -0.52
CPSF1-212ENST00000616140 TFPI2P48307 235 aa11.82□□□□□ -0.52
CPSF1-212ENST00000616140 LTBP1Q14766 1721 aa11.82□□□□□ -0.52
CPSF1-212ENST00000616140 C21orf62-AS1Q17RA5 79 aa11.82□□□□□ -0.52
CPSF1-212ENST00000616140 TMEM183AQ8IXX5 376 aa11.82□□□□□ -0.52
CPSF1-212ENST00000616140 C16orf92Q96LL3 132 aa11.82□□□□□ -0.52
CPSF1-212ENST00000616140 AMY1AP04745 511 aa11.82□□□□□ -0.52
CPSF1-212ENST00000616140 IGFBP2P18065 325 aa11.82□□□□□ -0.52
CPSF1-212ENST00000616140 ZNF502Q8TBZ5 544 aa11.82□□□□□ -0.52
CPSF1-212ENST00000616140 CLEC7AQ9BXN2 247 aa11.82□□□□□ -0.52
CPSF1-212ENST00000616140 ATP5G3P48201 142 aa11.81□□□□□ -0.52
CPSF1-212ENST00000616140 C2orf83Q53S99 150 aa11.81□□□□□ -0.52
CPSF1-212ENST00000616140 CLDND2Q8NHS1 167 aa11.81□□□□□ -0.52
CPSF1-212ENST00000616140 DEPPQ9NTK1 212 aa11.81□□□□□ -0.52
CPSF1-212ENST00000616140 IGLV3-32A0A0A0MS00 114 aa11.81□□□□□ -0.52
CPSF1-212ENST00000616140 IGHV1-69-2A0A0G2JMI3 117 aa11.81□□□□□ -0.52
CPSF1-212ENST00000616140 SNCGO76070 127 aa11.81□□□□□ -0.52
CPSF1-212ENST00000616140 ATP5IP56385 69 aaPredicted RBP11.81□□□□□ -0.52
CPSF1-212ENST00000616140 COTL1Q14019 142 aa11.81□□□□□ -0.52
CPSF1-212ENST00000616140 TMEM30BQ3MIR4 351 aa11.81□□□□□ -0.52
CPSF1-212ENST00000616140 OR4A47Q6IF82 309 aa11.81□□□□□ -0.52
CPSF1-212ENST00000616140 PNKDQ8N490 385 aa11.81□□□□□ -0.52
CPSF1-212ENST00000616140 F8VVB4 439 aa11.81□□□□□ -0.52
CPSF1-212ENST00000616140 F8VWA3 439 aa11.81□□□□□ -0.52
CPSF1-212ENST00000616140 IGHV1-2P23083 117 aa11.81□□□□□ -0.52
CPSF1-212ENST00000616140 IL4P05112 153 aa11.8□□□□□ -0.52
CPSF1-212ENST00000616140 UQCRFS1P47985 274 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms