RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 TEX45Q8NA69 505 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 VSTM2AQ8TAG5 236 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 DTD1Q8TEA8 209 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 EAF1Q96JC9 268 aaPredicted RBP11.43□□□□□ -0.58
USP39-220ENST00000613444 CYTL1Q9NRR1 136 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 ZNF257Q9Y2Q1 563 aa11.43□□□□□ -0.58
USP39-220ENST00000613444 NAV3Q8IVL0 2385 aa11.42□□□□□ -0.58
USP39-220ENST00000613444 H3BP45 60 aa11.42□□□□□ -0.58
USP39-220ENST00000613444 J3QLI3 93 aa11.42□□□□□ -0.58
USP39-220ENST00000613444 IFNA17P01571 189 aa11.42□□□□□ -0.58
USP39-220ENST00000613444 SNRNP70P08621 437 aaKnown RBP11.42□□□□□ -0.58
USP39-220ENST00000613444 C4BPBP20851 252 aa11.42□□□□□ -0.58
USP39-220ENST00000613444 VDAC2P45880 294 aaPredicted RBP11.42□□□□□ -0.58
USP39-220ENST00000613444 CAV2P51636 162 aa11.42□□□□□ -0.58
USP39-220ENST00000613444 F2RL1P55085 397 aa11.42□□□□□ -0.58
USP39-220ENST00000613444 PJVKQ0ZLH3 352 aa11.42□□□□□ -0.58
USP39-220ENST00000613444 VMA21Q3ZAQ7 101 aa11.42□□□□□ -0.58
USP39-220ENST00000613444 THNSL2Q86YJ6 484 aa11.42□□□□□ -0.58
USP39-220ENST00000613444 SLA2Q9H6Q3 261 aa11.42□□□□□ -0.58
USP39-220ENST00000613444 ZNF430Q9H8G1 570 aaPredicted RBP11.42□□□□□ -0.58
USP39-220ENST00000613444 OR51B2Q9Y5P1 312 aa11.42□□□□□ -0.58
USP39-220ENST00000613444 TEX50A0A1B0GTY4 177 aa11.41□□□□□ -0.58
USP39-220ENST00000613444 MOSP00540 346 aa11.41□□□□□ -0.58
USP39-220ENST00000613444 CFDP00746 253 aaPredicted RBP11.41□□□□□ -0.58
USP39-220ENST00000613444 FGF2P09038 288 aa11.41□□□□□ -0.58
USP39-220ENST00000613444 RPL23AP62750 156 aaKnown RBP11.41□□□□□ -0.58
USP39-220ENST00000613444 RPL8P62917 257 aaKnown RBP11.41□□□□□ -0.58
USP39-220ENST00000613444 TSNAXQ99598 290 aaKnown RBP11.41□□□□□ -0.58
USP39-220ENST00000613444 ARPC5LQ9BPX5 153 aa11.41□□□□□ -0.58
USP39-220ENST00000613444 PSENENQ9NZ42 101 aa11.41□□□□□ -0.58
USP39-220ENST00000613444 CACFD1Q9UGQ2 172 aa11.41□□□□□ -0.58
USP39-220ENST00000613444 SIGLEC9Q9Y336 463 aa11.41□□□□□ -0.58
USP39-220ENST00000613444 KANTRA0A1W2PQU2 76 aa11.41□□□□□ -0.58
USP39-220ENST00000613444 E7EUB6 86 aa11.41□□□□□ -0.58
USP39-220ENST00000613444 RGS13O14921 159 aa11.41□□□□□ -0.58
USP39-220ENST00000613444 NPBQ8NG41 125 aa11.41□□□□□ -0.58
USP39-220ENST00000613444 FBXL17Q9UF56 701 aa11.41□□□□□ -0.58
USP39-220ENST00000613444 MYO9AB2RTY4 2548 aa11.41□□□□□ -0.58
USP39-220ENST00000613444 CGB1A6NKQ9 187 aa11.4□□□□□ -0.58
USP39-220ENST00000613444 CEBPZOSA8MTT3 80 aa11.4□□□□□ -0.58
USP39-220ENST00000613444 NDUFA3O95167 84 aa11.4□□□□□ -0.58
USP39-220ENST00000613444 FAM120AOSQ5T036 256 aa11.4□□□□□ -0.58
USP39-220ENST00000613444 TEX261Q6UWH6 196 aa11.4□□□□□ -0.58
USP39-220ENST00000613444 TMEM14EPQ6UXP3 125 aa11.4□□□□□ -0.58
USP39-220ENST00000613444 SLC51BQ86UW2 128 aa11.4□□□□□ -0.58
USP39-220ENST00000613444 OR2T10Q8NGZ9 312 aa11.4□□□□□ -0.58
USP39-220ENST00000613444 OR5B3Q8NH48 314 aa11.4□□□□□ -0.58
USP39-220ENST00000613444 OR4C12Q96R67 309 aa11.4□□□□□ -0.58
USP39-220ENST00000613444 FKBP11Q9NYL4 201 aa11.4□□□□□ -0.58
USP39-220ENST00000613444 NUP50Q9UKX7 468 aa11.4□□□□□ -0.58
USP39-220ENST00000613444 SOX21Q9Y651 276 aaPredicted RBP11.4□□□□□ -0.58
USP39-220ENST00000613444 U3KQ87 197 aa11.4□□□□□ -0.58
USP39-220ENST00000613444 TLN2Q9Y4G6 2542 aa11.4□□□□□ -0.58
USP39-220ENST00000613444 A0A0U1RQK1 487 aa11.4□□□□□ -0.59
USP39-220ENST00000613444 A0A1B0GW64 132 aa11.4□□□□□ -0.59
USP39-220ENST00000613444 SPDEFO95238 335 aa11.4□□□□□ -0.59
USP39-220ENST00000613444 SSBP2P81877 361 aaPredicted RBP11.4□□□□□ -0.59
USP39-220ENST00000613444 PRCDQ00LT1 54 aa11.4□□□□□ -0.59
USP39-220ENST00000613444 HNF4GQ14541 408 aa11.4□□□□□ -0.59
USP39-220ENST00000613444 PRSS8Q16651 343 aa11.4□□□□□ -0.59
USP39-220ENST00000613444 HAPLN4Q86UW8 402 aa11.4□□□□□ -0.59
USP39-220ENST00000613444 CIB3Q96Q77 187 aaPredicted RBP11.4□□□□□ -0.59
USP39-220ENST00000613444 SLC25A31Q9H0C2 315 aa11.4□□□□□ -0.59
USP39-220ENST00000613444 MEGF9Q9H1U4 602 aa11.4□□□□□ -0.59
USP39-220ENST00000613444 FBXL15Q9H469 300 aa11.4□□□□□ -0.59
USP39-220ENST00000613444 WFDC1Q9HC57 220 aa11.4□□□□□ -0.59
USP39-220ENST00000613444 NDUFA4L2Q9NRX3 87 aa11.4□□□□□ -0.59
USP39-220ENST00000613444 MXRA5Q9NR99 2828 aa11.39□□□□□ -0.59
USP39-220ENST00000613444 RRHO14718 337 aa11.39□□□□□ -0.59
USP39-220ENST00000613444 CST7O76096 145 aa11.39□□□□□ -0.59
USP39-220ENST00000613444 FSHBP01225 129 aa11.39□□□□□ -0.59
USP39-220ENST00000613444 OPN1MWP04001 364 aa11.39□□□□□ -0.59
USP39-220ENST00000613444 OPN1MW2P0DN77 364 aa11.39□□□□□ -0.59
USP39-220ENST00000613444 OPN1MW3P0DN78 364 aa11.39□□□□□ -0.59
USP39-220ENST00000613444 BAXQ07812 192 aa11.39□□□□□ -0.59
USP39-220ENST00000613444 ARL16Q0P5N6 197 aa11.39□□□□□ -0.59
USP39-220ENST00000613444 TMEM267Q0VDI3 215 aaPredicted RBP11.39□□□□□ -0.59
USP39-220ENST00000613444 SPANXN5Q5MJ07 72 aa11.39□□□□□ -0.59
USP39-220ENST00000613444 PPP1R27Q86WC6 154 aa11.39□□□□□ -0.59
USP39-220ENST00000613444 ZC4H2Q9NQZ6 224 aa11.39□□□□□ -0.59
USP39-220ENST00000613444 METTL1Q9UBP6 276 aaKnown RBP11.39□□□□□ -0.59
USP39-220ENST00000613444 PMS2P5A8MQ11 134 aa11.38□□□□□ -0.59
USP39-220ENST00000613444 TAAR5O14804 337 aa11.38□□□□□ -0.59
USP39-220ENST00000613444 NBR2O15453 112 aa11.38□□□□□ -0.59
USP39-220ENST00000613444 METTL15P1P0C7V9 234 aa11.38□□□□□ -0.59
USP39-220ENST00000613444 SULT1A1P50225 295 aa11.38□□□□□ -0.59
USP39-220ENST00000613444 MMDQ15546 238 aa11.38□□□□□ -0.59
USP39-220ENST00000613444 C10orf55Q5SWW7 151 aa11.38□□□□□ -0.59
USP39-220ENST00000613444 CYB5R2Q6BCY4 276 aa11.38□□□□□ -0.59
USP39-220ENST00000613444 PIFOQ8TCI5 191 aa11.38□□□□□ -0.59
USP39-220ENST00000613444 TMEM170AQ8WVE7 144 aa11.38□□□□□ -0.59
USP39-220ENST00000613444 SMIM3Q9BZL3 60 aa11.38□□□□□ -0.59
USP39-220ENST00000613444 NOTCH2Q04721 2471 aa11.38□□□□□ -0.59
USP39-220ENST00000613444 C15orf62A8K5M9 175 aa11.38□□□□□ -0.59
USP39-220ENST00000613444 FCN1O00602 326 aa11.38□□□□□ -0.59
USP39-220ENST00000613444 HES1Q14469 280 aa11.38□□□□□ -0.59
USP39-220ENST00000613444 RPL7L1Q6DKI1 246 aaKnown RBP11.38□□□□□ -0.59
USP39-220ENST00000613444 MMD2Q8IY49 270 aa11.38□□□□□ -0.59
USP39-220ENST00000613444 STPG2Q8N412 459 aa11.38□□□□□ -0.59
USP39-220ENST00000613444 ZNF680Q8NEM1 530 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms