RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 LY86O95711 162 aa12.35□□□□□ -0.43
UPF1-206ENST00000598471 CRYGBP07316 175 aa12.35□□□□□ -0.43
UPF1-206ENST00000598471 SLC25A4P12235 298 aa12.35□□□□□ -0.43
UPF1-206ENST00000598471 NUP62P37198 522 aaPredicted RBP12.35□□□□□ -0.43
UPF1-206ENST00000598471 HSPE1P61604 102 aaKnown RBP12.35□□□□□ -0.43
UPF1-206ENST00000598471 POLR2GP62487 172 aaKnown RBP eCLIP12.35□□□□□ -0.43
UPF1-206ENST00000598471 PRSS8Q16651 343 aa12.35□□□□□ -0.43
UPF1-206ENST00000598471 C5orf64Q2M2E5 130 aa12.35□□□□□ -0.43
UPF1-206ENST00000598471 Q71RC1 249 aaPredicted RBP12.35□□□□□ -0.43
UPF1-206ENST00000598471 NOXA1Q86UR1 476 aa12.35□□□□□ -0.43
UPF1-206ENST00000598471 PPP1R27Q86WC6 154 aa12.35□□□□□ -0.43
UPF1-206ENST00000598471 C22orf15Q8WYQ4 148 aa12.35□□□□□ -0.43
UPF1-206ENST00000598471 ZNF430Q9H8G1 570 aaPredicted RBP12.35□□□□□ -0.43
UPF1-206ENST00000598471 MBD2Q9UBB5 411 aa12.35□□□□□ -0.43
UPF1-206ENST00000598471 TCF19Q9Y242 345 aa12.35□□□□□ -0.43
UPF1-206ENST00000598471 RCL1Q9Y2P8 373 aaKnown RBP12.35□□□□□ -0.43
UPF1-206ENST00000598471 ZNF257Q9Y2Q1 563 aa12.35□□□□□ -0.43
UPF1-206ENST00000598471 SOX21Q9Y651 276 aaPredicted RBP12.35□□□□□ -0.43
UPF1-206ENST00000598471 E5RGE8 158 aa12.34□□□□□ -0.43
UPF1-206ENST00000598471 SSSCA1O60232 199 aa12.34□□□□□ -0.43
UPF1-206ENST00000598471 GPR137BO60478 399 aa12.34□□□□□ -0.43
UPF1-206ENST00000598471 OR2F2O95006 317 aa12.34□□□□□ -0.43
UPF1-206ENST00000598471 F2RL1P55085 397 aa12.34□□□□□ -0.43
UPF1-206ENST00000598471 IL17RELQ6ZVW7 336 aa12.34□□□□□ -0.43
UPF1-206ENST00000598471 C16orf82Q7Z2V1 217 aa12.34□□□□□ -0.43
UPF1-206ENST00000598471 OR1L8Q8NGR8 309 aa12.34□□□□□ -0.43
UPF1-206ENST00000598471 DCUN1D4Q92564 292 aa12.34□□□□□ -0.43
UPF1-206ENST00000598471 RBM14Q96PK6 669 aaKnown RBP12.34□□□□□ -0.43
UPF1-206ENST00000598471 CIB3Q96Q77 187 aaPredicted RBP12.34□□□□□ -0.43
UPF1-206ENST00000598471 RAB40CQ96S21 281 aa12.34□□□□□ -0.43
UPF1-206ENST00000598471 RASL11BQ9BPW5 248 aa12.34□□□□□ -0.43
UPF1-206ENST00000598471 SLC25A33Q9BSK2 321 aa12.34□□□□□ -0.43
UPF1-206ENST00000598471 MAGT1Q9H0U3 335 aa12.34□□□□□ -0.43
UPF1-206ENST00000598471 ENY2Q9NPA8 101 aa12.34□□□□□ -0.43
UPF1-206ENST00000598471 MOB4Q9Y3A3 225 aa12.34□□□□□ -0.43
UPF1-206ENST00000598471 MDFIC2A0A1B0GVS7 189 aa12.33□□□□□ -0.44
UPF1-206ENST00000598471 G3V3Q6 166 aa12.33□□□□□ -0.44
UPF1-206ENST00000598471 BOLA2-SMG1P6H3BVE0 249 aa12.33□□□□□ -0.44
UPF1-206ENST00000598471 HOXA1P49639 335 aaPredicted RBP12.33□□□□□ -0.44
UPF1-206ENST00000598471 RPL23AP62750 156 aaKnown RBP12.33□□□□□ -0.44
UPF1-206ENST00000598471 TNXAQ16473 311 aa12.33□□□□□ -0.44
UPF1-206ENST00000598471 PDLIM3Q53GG5 364 aaPredicted RBP12.33□□□□□ -0.44
UPF1-206ENST00000598471 Q5BKY6 102 aa12.33□□□□□ -0.44
UPF1-206ENST00000598471 CLEC9AQ6UXN8 241 aa12.33□□□□□ -0.44
UPF1-206ENST00000598471 MRPL41Q8IXM3 137 aaKnown RBP12.33□□□□□ -0.44
UPF1-206ENST00000598471 PIFOQ8TCI5 191 aa12.33□□□□□ -0.44
UPF1-206ENST00000598471 DTD1Q8TEA8 209 aa12.33□□□□□ -0.44
UPF1-206ENST00000598471 SSMEM1Q8WWF3 244 aa12.33□□□□□ -0.44
UPF1-206ENST00000598471 HINT2Q9BX68 163 aa12.33□□□□□ -0.44
UPF1-206ENST00000598471 RBKSQ9H477 322 aa12.33□□□□□ -0.44
UPF1-206ENST00000598471 TPSG1Q9NRR2 321 aa12.33□□□□□ -0.44
UPF1-206ENST00000598471 PLSCR3Q9NRY6 295 aa12.33□□□□□ -0.44
UPF1-206ENST00000598471 TEX50A0A1B0GTY4 177 aa12.32□□□□□ -0.44
UPF1-206ENST00000598471 A6NDX4 124 aa12.32□□□□□ -0.44
UPF1-206ENST00000598471 HMSDA8MTL9 139 aa12.32□□□□□ -0.44
UPF1-206ENST00000598471 M0QZK8 103 aa12.32□□□□□ -0.44
UPF1-206ENST00000598471 FGF16O43320 207 aa12.32□□□□□ -0.44
UPF1-206ENST00000598471 CHST1O43916 411 aa12.32□□□□□ -0.44
UPF1-206ENST00000598471 LYL1P12980 280 aa12.32□□□□□ -0.44
UPF1-206ENST00000598471 EIF2B2P49770 351 aaKnown RBP12.32□□□□□ -0.44
UPF1-206ENST00000598471 GNB1P62873 340 aa12.32□□□□□ -0.44
UPF1-206ENST00000598471 PRCDQ00LT1 54 aa12.32□□□□□ -0.44
UPF1-206ENST00000598471 LY6EQ16553 131 aa12.32□□□□□ -0.44
UPF1-206ENST00000598471 TMEM65Q6PI78 240 aa12.32□□□□□ -0.44
UPF1-206ENST00000598471 RBMS3Q6XE24 437 aaKnown RBP12.32□□□□□ -0.44
UPF1-206ENST00000598471 Q6YL49 198 aa12.32□□□□□ -0.44
UPF1-206ENST00000598471 ZNF546Q86UE3 836 aa12.32□□□□□ -0.44
UPF1-206ENST00000598471 INO80EQ8NBZ0 244 aaPredicted RBP12.32□□□□□ -0.44
UPF1-206ENST00000598471 HIPK2Q9H2X6 1198 aa12.32□□□□□ -0.44
UPF1-206ENST00000598471 PRDM13Q9H4Q3 707 aa12.32□□□□□ -0.44
UPF1-206ENST00000598471 PLEKHA3Q9HB20 300 aa12.32□□□□□ -0.44
UPF1-206ENST00000598471 OR5AC2Q9NZP5 309 aa12.32□□□□□ -0.44
UPF1-206ENST00000598471 CDC42EP3Q9UKI2 254 aa12.32□□□□□ -0.44
UPF1-206ENST00000598471 ZANQ9Y493 2812 aa12.31□□□□□ -0.44
UPF1-206ENST00000598471 A0A1W2PN81 502 aa12.31□□□□□ -0.44
UPF1-206ENST00000598471 H0YIZ8 118 aa12.31□□□□□ -0.44
UPF1-206ENST00000598471 CNIH1O95406 144 aa12.31□□□□□ -0.44
UPF1-206ENST00000598471 CA2P00918 260 aa12.31□□□□□ -0.44
UPF1-206ENST00000598471 IGHV4-59P01825 116 aa12.31□□□□□ -0.44
UPF1-206ENST00000598471 IAPPP10997 89 aa12.31□□□□□ -0.44
UPF1-206ENST00000598471 CHRNA7P36544 502 aa12.31□□□□□ -0.44
UPF1-206ENST00000598471 IER3P46695 156 aa12.31□□□□□ -0.44
UPF1-206ENST00000598471 RPL27AP46776 148 aaKnown RBP12.31□□□□□ -0.44
UPF1-206ENST00000598471 P2RY1P47900 373 aa12.31□□□□□ -0.44
UPF1-206ENST00000598471 COMPP49747 757 aaPredicted RBP12.31□□□□□ -0.44
UPF1-206ENST00000598471 TAS2R30P59541 319 aa12.31□□□□□ -0.44
UPF1-206ENST00000598471 PJVKQ0ZLH3 352 aa12.31□□□□□ -0.44
UPF1-206ENST00000598471 FBLN7Q53RD9 439 aa12.31□□□□□ -0.44
UPF1-206ENST00000598471 TMEM219Q86XT9 240 aa12.31□□□□□ -0.44
UPF1-206ENST00000598471 Q8N9W7 124 aa12.31□□□□□ -0.44
UPF1-206ENST00000598471 SMIM8Q96KF7 97 aa12.31□□□□□ -0.44
UPF1-206ENST00000598471 RNF126Q9BV68 326 aa12.31□□□□□ -0.44
UPF1-206ENST00000598471 HEYLQ9NQ87 328 aaPredicted RBP12.31□□□□□ -0.44
UPF1-206ENST00000598471 WSB1Q9Y6I7 421 aa12.31□□□□□ -0.44
UPF1-206ENST00000598471 CSPG4Q6UVK1 2322 aa12.3□□□□□ -0.44
UPF1-206ENST00000598471 ARPC5O15511 151 aa12.3□□□□□ -0.44
UPF1-206ENST00000598471 HLA-DRB1P01911 266 aa12.3□□□□□ -0.44
UPF1-206ENST00000598471 CAV2P51636 162 aa12.3□□□□□ -0.44
UPF1-206ENST00000598471 RPP30P78346 268 aaKnown RBP12.3□□□□□ -0.44
UPF1-206ENST00000598471 SPINK9Q5DT21 86 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms