RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 AKIP1Q9NQ31 210 aa12.47□□□□□ -0.41
TRIM28-206ENST00000595974 RABL2AQ9UBK7 228 aaPredicted RBP12.47□□□□□ -0.41
TRIM28-206ENST00000595974 RABL2BQ9UNT1 228 aa12.47□□□□□ -0.41
TRIM28-206ENST00000595974 A0A1B0GW64 132 aa12.46□□□□□ -0.41
TRIM28-206ENST00000595974 ANKRD34BA5PLL1 514 aa12.46□□□□□ -0.41
TRIM28-206ENST00000595974 E7EUB6 86 aa12.46□□□□□ -0.41
TRIM28-206ENST00000595974 UPK2O00526 184 aa12.46□□□□□ -0.41
TRIM28-206ENST00000595974 SAP30O75446 220 aa12.46□□□□□ -0.41
TRIM28-206ENST00000595974 RBMXL2O75526 392 aaKnown RBP12.46□□□□□ -0.41
TRIM28-206ENST00000595974 CD3DP04234 171 aa12.46□□□□□ -0.41
TRIM28-206ENST00000595974 TAS2R19P59542 299 aa12.46□□□□□ -0.41
TRIM28-206ENST00000595974 ZNF45Q02386 682 aa12.46□□□□□ -0.41
TRIM28-206ENST00000595974 PHLDA2Q53GA4 152 aa12.46□□□□□ -0.41
TRIM28-206ENST00000595974 FAM209BQ5JX69 171 aa12.46□□□□□ -0.41
TRIM28-206ENST00000595974 ACSM6Q6P461 480 aa12.46□□□□□ -0.41
TRIM28-206ENST00000595974 CADM3Q8N126 398 aa12.46□□□□□ -0.41
TRIM28-206ENST00000595974 NECAP1Q8NC96 275 aa12.46□□□□□ -0.41
TRIM28-206ENST00000595974 COMMD5Q9GZQ3 224 aa12.46□□□□□ -0.41
TRIM28-206ENST00000595974 PEF1Q9UBV8 284 aaKnown RBP12.46□□□□□ -0.41
TRIM28-206ENST00000595974 DHFRP00374 187 aa12.45□□□□□ -0.42
TRIM28-206ENST00000595974 PRH1P02810 166 aa12.45□□□□□ -0.42
TRIM28-206ENST00000595974 CD74P04233 296 aa12.45□□□□□ -0.42
TRIM28-206ENST00000595974 CRYGCP07315 174 aa12.45□□□□□ -0.42
TRIM28-206ENST00000595974 ECI1P42126 302 aa12.45□□□□□ -0.42
TRIM28-206ENST00000595974 LPAR6P43657 344 aa12.45□□□□□ -0.42
TRIM28-206ENST00000595974 OR2B8PP59922 312 aa12.45□□□□□ -0.42
TRIM28-206ENST00000595974 ATP5G2Q06055 141 aa12.45□□□□□ -0.42
TRIM28-206ENST00000595974 EXOSC2Q13868 293 aaKnown RBP12.45□□□□□ -0.42
TRIM28-206ENST00000595974 THOC7Q6I9Y2 204 aaKnown RBP12.45□□□□□ -0.42
TRIM28-206ENST00000595974 TBC1D26Q86UD7 250 aa12.45□□□□□ -0.42
TRIM28-206ENST00000595974 LHFPL1Q86WI0 220 aa12.45□□□□□ -0.42
TRIM28-206ENST00000595974 TMEM229BQ8NBD8 167 aa12.45□□□□□ -0.42
TRIM28-206ENST00000595974 SMIM4Q8WVI0 70 aa12.45□□□□□ -0.42
TRIM28-206ENST00000595974 ZNF486Q96H40 463 aaPredicted RBP12.45□□□□□ -0.42
TRIM28-206ENST00000595974 DIRAS2Q96HU8 199 aa12.45□□□□□ -0.42
TRIM28-206ENST00000595974 SRSF8Q9BRL6 282 aaKnown RBP12.45□□□□□ -0.42
TRIM28-206ENST00000595974 SLIRPQ9GZT3 109 aaKnown RBP12.45□□□□□ -0.42
TRIM28-206ENST00000595974 C6orf62Q9GZU0 229 aaPredicted RBP12.45□□□□□ -0.42
TRIM28-206ENST00000595974 TRAV3A0A0B4J244 114 aa12.44□□□□□ -0.42
TRIM28-206ENST00000595974 CGB1A6NKQ9 187 aa12.44□□□□□ -0.42
TRIM28-206ENST00000595974 CTDSPLO15194 276 aa12.44□□□□□ -0.42
TRIM28-206ENST00000595974 MYOD1P15172 320 aa12.44□□□□□ -0.42
TRIM28-206ENST00000595974 AREGP15514 252 aa12.44□□□□□ -0.42
TRIM28-206ENST00000595974 CTRB1P17538 263 aa12.44□□□□□ -0.42
TRIM28-206ENST00000595974 PSMB6P28072 239 aa12.44□□□□□ -0.42
TRIM28-206ENST00000595974 ZNF585BQ52M93 769 aa12.44□□□□□ -0.42
TRIM28-206ENST00000595974 CTRB2Q6GPI1 263 aa12.44□□□□□ -0.42
TRIM28-206ENST00000595974 ELOVL1Q9BW60 279 aa12.44□□□□□ -0.42
TRIM28-206ENST00000595974 QTRT1Q9BXR0 403 aaKnown RBP12.44□□□□□ -0.42
TRIM28-206ENST00000595974 ZNF256Q9Y2P7 627 aaPredicted RBP12.44□□□□□ -0.42
TRIM28-206ENST00000595974 OR2J3O76001 311 aa12.43□□□□□ -0.42
TRIM28-206ENST00000595974 RAB3DO95716 219 aa12.43□□□□□ -0.42
TRIM28-206ENST00000595974 TRBV12-3P01733 135 aa12.43□□□□□ -0.42
TRIM28-206ENST00000595974 PGAM2P15259 253 aa12.43□□□□□ -0.42
TRIM28-206ENST00000595974 RPA2P15927 270 aa12.43□□□□□ -0.42
TRIM28-206ENST00000595974 HIST1H1BP16401 226 aaKnown RBP12.43□□□□□ -0.42
TRIM28-206ENST00000595974 PTBP1P26599 531 aaKnown RBP eCLIP12.43□□□□□ -0.42
TRIM28-206ENST00000595974 RND3P61587 244 aa12.43□□□□□ -0.42
TRIM28-206ENST00000595974 IL18Q14116 193 aa12.43□□□□□ -0.42
TRIM28-206ENST00000595974 KLK9Q2XQG4 91 aa12.43□□□□□ -0.42
TRIM28-206ENST00000595974 C15orf32Q32M92 178 aa12.43□□□□□ -0.42
TRIM28-206ENST00000595974 DEFB121Q5J5C9 76 aa12.43□□□□□ -0.42
TRIM28-206ENST00000595974 STEAP1BQ6NZ63 245 aa12.43□□□□□ -0.42
TRIM28-206ENST00000595974 OR6Q1Q8NGQ2 317 aa12.43□□□□□ -0.42
TRIM28-206ENST00000595974 OR4C12Q96R67 309 aa12.43□□□□□ -0.42
TRIM28-206ENST00000595974 KLK9Q9UKQ9 250 aa12.43□□□□□ -0.42
TRIM28-206ENST00000595974 CEPT1Q9Y6K0 416 aa12.43□□□□□ -0.42
TRIM28-206ENST00000595974 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.42□□□□□ -0.42
TRIM28-206ENST00000595974 IGLC7A0M8Q6 106 aa12.42□□□□□ -0.42
TRIM28-206ENST00000595974 KRASP01116 189 aa12.42□□□□□ -0.42
TRIM28-206ENST00000595974 G6PCP35575 357 aa12.42□□□□□ -0.42
TRIM28-206ENST00000595974 KLF5Q13887 457 aaPredicted RBP12.42□□□□□ -0.42
TRIM28-206ENST00000595974 MEF2DQ14814 521 aa12.42□□□□□ -0.42
TRIM28-206ENST00000595974 RPEL1Q2QD12 228 aa12.42□□□□□ -0.42
TRIM28-206ENST00000595974 C19orf35Q6ZS72 473 aa12.42□□□□□ -0.42
TRIM28-206ENST00000595974 HSD17B13Q7Z5P4 300 aaPredicted RBP12.42□□□□□ -0.42
TRIM28-206ENST00000595974 FANCD2OSQ96PS1 177 aa12.42□□□□□ -0.42
TRIM28-206ENST00000595974 PRR25Q96S07 402 aa12.42□□□□□ -0.42
TRIM28-206ENST00000595974 TSC22D3Q99576 134 aa12.42□□□□□ -0.42
TRIM28-206ENST00000595974 FBXL7Q9UJT9 491 aa12.42□□□□□ -0.42
TRIM28-206ENST00000595974 SNAPC5O75971 98 aa12.41□□□□□ -0.42
TRIM28-206ENST00000595974 DEFA4P12838 97 aa12.41□□□□□ -0.42
TRIM28-206ENST00000595974 PPP5CP53041 499 aa12.41□□□□□ -0.42
TRIM28-206ENST00000595974 TATDN3Q17R31 274 aa12.41□□□□□ -0.42
TRIM28-206ENST00000595974 OR4D10Q8NGI6 311 aa12.41□□□□□ -0.42
TRIM28-206ENST00000595974 OR9G4Q8NGQ1 327 aa12.41□□□□□ -0.42
TRIM28-206ENST00000595974 OR1L8Q8NGR8 309 aa12.41□□□□□ -0.42
TRIM28-206ENST00000595974 TERB2Q8NHR7 220 aa12.41□□□□□ -0.42
TRIM28-206ENST00000595974 MCFD2Q8NI22 146 aa12.41□□□□□ -0.42
TRIM28-206ENST00000595974 NXF2Q9GZY0 626 aaKnown RBP12.41□□□□□ -0.42
TRIM28-206ENST00000595974 RSL24D1Q9UHA3 163 aaKnown RBP12.41□□□□□ -0.42
TRIM28-206ENST00000595974 PRNDQ9UKY0 176 aa12.41□□□□□ -0.42
TRIM28-206ENST00000595974 IGLV11-55A0A075B6I3 123 aa12.4□□□□□ -0.42
TRIM28-206ENST00000595974 CCDC160A6NGH7 325 aa12.4□□□□□ -0.42
TRIM28-206ENST00000595974 H0Y980 276 aa12.4□□□□□ -0.42
TRIM28-206ENST00000595974 BMPR1BO00238 502 aa12.4□□□□□ -0.42
TRIM28-206ENST00000595974 LY86O95711 162 aa12.4□□□□□ -0.42
TRIM28-206ENST00000595974 REG1AP05451 166 aa12.4□□□□□ -0.42
TRIM28-206ENST00000595974 TRAPPC2P0DI81 140 aa12.4□□□□□ -0.42
TRIM28-206ENST00000595974 TRAPPC2BP0DI82 140 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms