RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 TMEM269A0A1B0GVZ9 245 aa1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 TRAPPC2LH3BP13 241 aa1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 TXNDC9O14530 226 aa1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 LGALS1P09382 135 aaKnown RBP1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 HIST1H1EP10412 219 aaKnown RBP1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 MYL12AP19105 171 aa1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 MAGEA12P43365 314 aa1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 SLCO1A2P46721 670 aa1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 AP2S1P53680 142 aaPredicted RBP1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 TAS2R20P59543 309 aa1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 MAGOHP61326 146 aaKnown RBP1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 RPL30P62888 115 aaKnown RBP1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 IFITM2Q01629 132 aa1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 GNA12Q03113 381 aa1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 PABPC1L2AQ5JQF8 200 aa1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 PTRHD1Q6GMV3 140 aaKnown RBP1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 C5orf46Q6UWT4 87 aa1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 SLC35E3Q7Z769 313 aa1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 SLC51BQ86UW2 128 aa1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 OR51D1Q8NGF3 324 aa1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 OR5J2Q8NH18 312 aa1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 ERMAPQ96PL5 475 aaPredicted RBP1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 GUCA1BQ9UMX6 200 aa1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 ZNF106Q9H2Y7 1883 aaKnown RBP1.24□□□□□ -2.21
SMCHD1-204ENST00000581226 DCCP43146 1447 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 IGHV3-64A0A075B6Q5 118 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 H3BT86 120 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 LEPROTO15243 131 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 AHSA1O95433 338 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 C1QCP02747 245 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 CALB1P05937 261 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 UCHL1P09936 223 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 LYNX1P0DP58 116 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 FGF6P10767 208 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 EVX1P49640 407 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 FXYD7P58549 80 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 GUK1Q16774 197 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 C8orf74Q6P047 294 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 DYNAPQ8N1N2 210 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 C9orf163Q8N9P6 203 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 SLC35B4Q969S0 331 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 CISHQ9NSE2 258 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 CMTM6Q9NX76 183 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 AK3Q9UIJ7 227 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 MYOFQ9NZM1 2061 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 PLB1Q6P1J6 1458 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 NUP160Q12769 1436 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 RP1P56715 2156 aa1.23□□□□□ -2.21
SMCHD1-204ENST00000581226 TRAV7A0A075B6U4 112 aa1.22□□□□□ -2.21
SMCHD1-204ENST00000581226 IGKV1D-43A0A0B4J1Z2 117 aa1.22□□□□□ -2.21
SMCHD1-204ENST00000581226 IGHV1-18A0A0C4DH31 117 aa1.22□□□□□ -2.21
SMCHD1-204ENST00000581226 A0A0J9YW62 118 aa1.22□□□□□ -2.21
SMCHD1-204ENST00000581226 A0A1B0GW54 56 aa1.22□□□□□ -2.21
SMCHD1-204ENST00000581226 KRT7P08729 469 aa1.22□□□□□ -2.21
SMCHD1-204ENST00000581226 RELAQ04206 551 aa1.22□□□□□ -2.21
SMCHD1-204ENST00000581226 PMAIP1Q13794 54 aa1.22□□□□□ -2.21
SMCHD1-204ENST00000581226 LYZL1Q6UWQ5 148 aa1.22□□□□□ -2.21
SMCHD1-204ENST00000581226 LRRC28Q86X40 367 aaPredicted RBP1.22□□□□□ -2.21
SMCHD1-204ENST00000581226 HSPB9Q9BQS6 159 aa1.22□□□□□ -2.21
SMCHD1-204ENST00000581226 TP73-AS1Q9UF72 201 aa1.22□□□□□ -2.21
SMCHD1-204ENST00000581226 SCAF11Q99590 1463 aaKnown RBP1.22□□□□□ -2.21
SMCHD1-204ENST00000581226 PLXND1Q9Y4D7 1925 aa1.22□□□□□ -2.21
SMCHD1-204ENST00000581226 DOCK3Q8IZD9 2030 aa1.22□□□□□ -2.21
SMCHD1-204ENST00000581226 MYO3BQ8WXR4 1341 aa1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 RP1L1Q8IWN7 2480 aaPredicted RBP1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 A0A0J9YY10 115 aa1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 A0A1B0GX78 115 aa1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 EEF1E1-BLOC1S5C9J1V9 151 aa1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 I3L521 148 aa1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 ZNF737O75373 536 aa1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 DCTN3O75935 186 aa1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 OR5G3P0C626 314 aa1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 TPI1P60174 286 aa1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 RAB14P61106 215 aa1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 TMA16Q96EY4 203 aaKnown RBP1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 CNBD2Q96M20 576 aa1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 PAQR5Q9NXK6 330 aaPredicted RBP1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 ANGPT4Q9Y264 503 aa1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 TIMM22Q9Y584 194 aa1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 SMARCA4P51532 1647 aa1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 ZFYVE9O95405 1425 aa1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 WRNQ14191 1432 aaPredicted RBP eCLIP1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 MED12LQ86YW9 2145 aa1.21□□□□□ -2.22
SMCHD1-204ENST00000581226 KIF13BQ9NQT8 1826 aa1.2□□□□□ -2.22
SMCHD1-204ENST00000581226 A0A0D9SEW6 157 aa1.2□□□□□ -2.22
SMCHD1-204ENST00000581226 LYPLA2O95372 231 aa1.2□□□□□ -2.22
SMCHD1-204ENST00000581226 SERPINA6P08185 405 aa1.2□□□□□ -2.22
SMCHD1-204ENST00000581226 UCHL3P15374 230 aa1.2□□□□□ -2.22
SMCHD1-204ENST00000581226 HLA-DMBP28068 263 aa1.2□□□□□ -2.22
SMCHD1-204ENST00000581226 AQP4P55087 323 aa1.2□□□□□ -2.22
SMCHD1-204ENST00000581226 OR4D2P58180 307 aa1.2□□□□□ -2.22
SMCHD1-204ENST00000581226 SLC38A11Q08AI6 406 aa1.2□□□□□ -2.22
SMCHD1-204ENST00000581226 FABP9Q0Z7S8 132 aa1.2□□□□□ -2.22
SMCHD1-204ENST00000581226 ITGB3BPQ13352 177 aaPredicted RBP1.2□□□□□ -2.22
SMCHD1-204ENST00000581226 KISS1Q15726 138 aa1.2□□□□□ -2.22
SMCHD1-204ENST00000581226 BATFQ16520 125 aa1.2□□□□□ -2.22
SMCHD1-204ENST00000581226 OR8B12Q8NGG6 310 aa1.2□□□□□ -2.22
SMCHD1-204ENST00000581226 ANKRD7Q92527 254 aa1.2□□□□□ -2.22
SMCHD1-204ENST00000581226 FKBP14Q9NWM8 211 aa1.2□□□□□ -2.22
SMCHD1-204ENST00000581226 KIF24Q5T7B8 1368 aa1.2□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms