RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 DHFRP00374 187 aa11.38□□□□□ -0.59
SS18-212ENST00000579061 ERVK-16P61578 105 aa11.38□□□□□ -0.59
SS18-212ENST00000579061 EXOSC2Q13868 293 aaKnown RBP11.38□□□□□ -0.59
SS18-212ENST00000579061 THOC7Q6I9Y2 204 aaKnown RBP11.38□□□□□ -0.59
SS18-212ENST00000579061 OR52I2Q8NH67 350 aa11.38□□□□□ -0.59
SS18-212ENST00000579061 PRR25Q96S07 402 aa11.38□□□□□ -0.59
SS18-212ENST00000579061 B9D2Q9BPU9 175 aa11.38□□□□□ -0.59
SS18-212ENST00000579061 MIXL1Q9H2W2 232 aa11.38□□□□□ -0.59
SS18-212ENST00000579061 TMEM140Q9NV12 185 aa11.38□□□□□ -0.59
SS18-212ENST00000579061 RABL2AQ9UBK7 228 aaPredicted RBP11.38□□□□□ -0.59
SS18-212ENST00000579061 KLK11Q9UBX7 282 aa11.38□□□□□ -0.59
SS18-212ENST00000579061 RABL2BQ9UNT1 228 aa11.38□□□□□ -0.59
SS18-212ENST00000579061 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.37□□□□□ -0.59
SS18-212ENST00000579061 MARCH11A6NNE9 402 aa11.37□□□□□ -0.59
SS18-212ENST00000579061 PRH1P02810 166 aa11.37□□□□□ -0.59
SS18-212ENST00000579061 HIST1H1BP16401 226 aaKnown RBP11.37□□□□□ -0.59
SS18-212ENST00000579061 CTRB1P17538 263 aa11.37□□□□□ -0.59
SS18-212ENST00000579061 PSMB6P28072 239 aa11.37□□□□□ -0.59
SS18-212ENST00000579061 LPAR6P43657 344 aa11.37□□□□□ -0.59
SS18-212ENST00000579061 OR2B8PP59922 312 aa11.37□□□□□ -0.59
SS18-212ENST00000579061 MRPS10P82664 201 aaKnown RBP11.37□□□□□ -0.59
SS18-212ENST00000579061 DEFA5Q01523 94 aa11.37□□□□□ -0.59
SS18-212ENST00000579061 SSBP1Q04837 148 aaKnown RBP11.37□□□□□ -0.59
SS18-212ENST00000579061 TATDN3Q17R31 274 aa11.37□□□□□ -0.59
SS18-212ENST00000579061 RNASE10Q5GAN6 216 aaKnown RBP11.37□□□□□ -0.59
SS18-212ENST00000579061 CTRB2Q6GPI1 263 aa11.37□□□□□ -0.59
SS18-212ENST00000579061 SLC38A6Q8IZM9 456 aa11.37□□□□□ -0.59
SS18-212ENST00000579061 ARRDC1Q8N5I2 433 aa11.37□□□□□ -0.59
SS18-212ENST00000579061 DYNC2LI1Q8TCX1 351 aa11.37□□□□□ -0.59
SS18-212ENST00000579061 ABHD1Q96SE0 405 aa11.37□□□□□ -0.59
SS18-212ENST00000579061 COMMD5Q9GZQ3 224 aa11.37□□□□□ -0.59
SS18-212ENST00000579061 CCDC59Q9P031 241 aaKnown RBP11.37□□□□□ -0.59
SS18-212ENST00000579061 COL7A1Q02388 2944 aa11.36□□□□□ -0.59
SS18-212ENST00000579061 TRAV3A0A0B4J244 114 aa11.36□□□□□ -0.59
SS18-212ENST00000579061 CGB1A6NKQ9 187 aa11.36□□□□□ -0.59
SS18-212ENST00000579061 GABARAPH6UMI1 98 aa11.36□□□□□ -0.59
SS18-212ENST00000579061 CTDSP2O14595 271 aa11.36□□□□□ -0.59
SS18-212ENST00000579061 RGS5O15539 181 aa11.36□□□□□ -0.59
SS18-212ENST00000579061 OR2J3O76001 311 aa11.36□□□□□ -0.59
SS18-212ENST00000579061 TRBV12-3P01733 135 aa11.36□□□□□ -0.59
SS18-212ENST00000579061 IFNA6P05013 189 aa11.36□□□□□ -0.59
SS18-212ENST00000579061 AREGP15514 252 aa11.36□□□□□ -0.59
SS18-212ENST00000579061 CD69Q07108 199 aa11.36□□□□□ -0.59
SS18-212ENST00000579061 RPEL1Q2QD12 228 aa11.36□□□□□ -0.59
SS18-212ENST00000579061 C15orf32Q32M92 178 aa11.36□□□□□ -0.59
SS18-212ENST00000579061 ZNF585BQ52M93 769 aa11.36□□□□□ -0.59
SS18-212ENST00000579061 HSD17B13Q7Z5P4 300 aaPredicted RBP11.36□□□□□ -0.59
SS18-212ENST00000579061 LAX1Q8IWV1 398 aa11.36□□□□□ -0.59
SS18-212ENST00000579061 OR9G4Q8NGQ1 327 aa11.36□□□□□ -0.59
SS18-212ENST00000579061 FCAMRQ8WWV6 532 aa11.36□□□□□ -0.59
SS18-212ENST00000579061 ZNF486Q96H40 463 aaPredicted RBP11.36□□□□□ -0.59
SS18-212ENST00000579061 FANCD2OSQ96PS1 177 aa11.36□□□□□ -0.59
SS18-212ENST00000579061 DNAH9Q9NYC9 4486 aa11.36□□□□□ -0.59
SS18-212ENST00000579061 M0QYG6 137 aa11.35□□□□□ -0.59
SS18-212ENST00000579061 NOL3O60936 208 aaKnown RBP11.35□□□□□ -0.59
SS18-212ENST00000579061 LY86O95711 162 aa11.35□□□□□ -0.59
SS18-212ENST00000579061 IGLV1-51P01701 117 aa11.35□□□□□ -0.59
SS18-212ENST00000579061 CD74P04233 296 aa11.35□□□□□ -0.59
SS18-212ENST00000579061 MYOD1P15172 320 aa11.35□□□□□ -0.59
SS18-212ENST00000579061 PTBP1P26599 531 aaKnown RBP eCLIP11.35□□□□□ -0.59
SS18-212ENST00000579061 TAS2R19P59542 299 aa11.35□□□□□ -0.59
SS18-212ENST00000579061 RND3P61587 244 aa11.35□□□□□ -0.59
SS18-212ENST00000579061 PHLDA2Q53GA4 152 aa11.35□□□□□ -0.59
SS18-212ENST00000579061 RNASE12Q5GAN4 147 aaKnown RBP11.35□□□□□ -0.59
SS18-212ENST00000579061 LHFPL1Q86WI0 220 aa11.35□□□□□ -0.59
SS18-212ENST00000579061 TMEM229BQ8NBD8 167 aa11.35□□□□□ -0.59
SS18-212ENST00000579061 OR1L8Q8NGR8 309 aa11.35□□□□□ -0.59
SS18-212ENST00000579061 QTRT1Q9BXR0 403 aaKnown RBP11.35□□□□□ -0.59
SS18-212ENST00000579061 SIGLEC8Q9NYZ4 499 aa11.35□□□□□ -0.59
SS18-212ENST00000579061 FBXL7Q9UJT9 491 aa11.35□□□□□ -0.59
SS18-212ENST00000579061 IGLC7A0M8Q6 106 aa11.34□□□□□ -0.59
SS18-212ENST00000579061 BMPR1BO00238 502 aa11.34□□□□□ -0.59
SS18-212ENST00000579061 CD3DP04234 171 aa11.34□□□□□ -0.59
SS18-212ENST00000579061 SPNP16150 400 aa11.34□□□□□ -0.59
SS18-212ENST00000579061 SYNJ2BPP57105 145 aa11.34□□□□□ -0.59
SS18-212ENST00000579061 TBC1D26Q86UD7 250 aa11.34□□□□□ -0.59
SS18-212ENST00000579061 TSC22D3Q99576 134 aa11.34□□□□□ -0.59
SS18-212ENST00000579061 IGLV11-55A0A075B6I3 123 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 TEX50A0A1B0GTY4 177 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 CTDSPLO15194 276 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 SNAPC5O75971 98 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 KRASP01116 189 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 TRAPPC2P0DI81 140 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 TRAPPC2BP0DI82 140 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 DEFA4P12838 97 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 GP9P14770 177 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 RPA2P15927 270 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 G6PCP35575 357 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 IL34Q6ZMJ4 242 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 SMIM4Q8WVI0 70 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 DIRAS2Q96HU8 199 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 NDUFA4L2Q9NRX3 87 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 FKBP11Q9NYL4 201 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 PEMTQ9UBM1 199 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 PRNDQ9UKY0 176 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 DMRT1Q9Y5R6 373 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 SMAD5-AS1Q9Y6J3 95 aa11.33□□□□□ -0.6
SS18-212ENST00000579061 H3BMQ9 156 aa11.32□□□□□ -0.6
SS18-212ENST00000579061 CYB5BO43169 146 aa11.32□□□□□ -0.6
SS18-212ENST00000579061 NDUFB8O95169 186 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms