RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 DEFB113Q30KQ7 82 aa5.52□□□□□ -1.53
VPS53-217ENST00000575100 TIMM50Q3ZCQ8 353 aa5.52□□□□□ -1.53
VPS53-217ENST00000575100 TMEM244Q5VVB8 128 aa5.52□□□□□ -1.53
VPS53-217ENST00000575100 WDR82Q6UXN9 313 aa5.52□□□□□ -1.53
VPS53-217ENST00000575100 GDPGP1Q6ZNW5 385 aa5.52□□□□□ -1.53
VPS53-217ENST00000575100 KRTAP1-3Q8IUG1 177 aa5.52□□□□□ -1.53
VPS53-217ENST00000575100 EIF4E3Q8N5X7 224 aaKnown RBP5.52□□□□□ -1.53
VPS53-217ENST00000575100 COQ8AQ8NI60 647 aa5.52□□□□□ -1.53
VPS53-217ENST00000575100 RNASE6Q93091 150 aaKnown RBP5.52□□□□□ -1.53
VPS53-217ENST00000575100 OR2J1Q9GZK6 312 aa5.52□□□□□ -1.53
VPS53-217ENST00000575100 SLIRPQ9GZT3 109 aaKnown RBP5.52□□□□□ -1.53
VPS53-217ENST00000575100 TAS2R4Q9NYW5 299 aa5.52□□□□□ -1.53
VPS53-217ENST00000575100 NSD1Q96L73 2696 aaPredicted RBP5.52□□□□□ -1.53
VPS53-217ENST00000575100 ZNF469Q96JG9 3925 aaPredicted RBP5.51□□□□□ -1.53
VPS53-217ENST00000575100 IGLV9-49A0A0B4J1Y8 123 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 IGKV1-9A0A0C4DH69 117 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 TINCRA0A1B0GVN0 87 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 ISPDA4D126 451 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 DPRXA6NFQ7 191 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 K7EMT4 169 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 CYB5BO43169 146 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 DHRS3O75911 302 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 NDUFB8O95169 186 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 PTTG1O95997 202 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 MAS1P04201 325 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 CT45A6P0DMU7 189 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 CT45A5P0DMU8 189 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 CT45A7P0DMV0 189 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 ZNF250P15622 560 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 RBMXP38159 391 aaKnown RBP5.51□□□□□ -1.53
VPS53-217ENST00000575100 MPV17P39210 176 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 RAB2AP61019 212 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 RND3P61587 244 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 PKIAP61925 76 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 ZNF154Q13106 437 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 KIAA0141Q14154 515 aaPredicted RBP5.51□□□□□ -1.53
VPS53-217ENST00000575100 CT45A1Q5HYN5 189 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 TMEM42Q69YG0 159 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 CRIP3Q6Q6R5 217 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 LRRTM1Q86UE6 522 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 CBLN2Q8IUK8 224 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 LGI3Q8N145 548 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 CT45A3Q8NHU0 189 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 APOBEC3DQ96AK3 386 aaPredicted RBP5.51□□□□□ -1.53
VPS53-217ENST00000575100 MUCL1Q96DR8 90 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 EHFQ9NZC4 300 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 ZNF391Q9UJN7 358 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 ING4Q9UNL4 249 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 KLF12Q9Y4X4 402 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 V9GYS6 101 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 CADP27708 2225 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 FBN3Q75N90 2809 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 LYRM9A8MSI8 78 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 TYMSP04818 313 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 SLC2A2P11168 524 aaPredicted RBP5.51□□□□□ -1.53
VPS53-217ENST00000575100 AKR1C4P17516 323 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 RPL35AP18077 110 aaKnown RBP5.51□□□□□ -1.53
VPS53-217ENST00000575100 PPP1CBP62140 327 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 BSPH1Q075Z2 132 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 ZNF616Q08AN1 781 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 HNRNPA0Q13151 305 aaKnown RBP5.51□□□□□ -1.53
VPS53-217ENST00000575100 OR8B8Q15620 311 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 FAM131AQ6UXB0 335 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 LRP11Q86VZ4 500 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 C9orf62Q8N4C0 152 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 C12orf45Q8N5I9 185 aaPredicted RBP5.51□□□□□ -1.53
VPS53-217ENST00000575100 SLC25A40Q8TBP6 338 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 Q8TCH9 128 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 TCTEX1D2Q8WW35 142 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 SLC25A46Q96AG3 418 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 URB1-AS1Q96HZ7 61 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 C18orf12Q96KH6 178 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 C2orf48Q96LS8 159 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 SCGB3A2Q96PL1 93 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 SPACA5Q96QH8 159 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 FGF23Q9GZV9 251 aaPredicted RBP5.51□□□□□ -1.53
VPS53-217ENST00000575100 PLEKHF2Q9H8W4 249 aa5.51□□□□□ -1.53
VPS53-217ENST00000575100 TRAV1-2A0A0B4J238 106 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 MPTX1A8MV57 137 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 CRXO43186 299 aaPredicted RBP5.5□□□□□ -1.53
VPS53-217ENST00000575100 SPRY3O43610 288 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 TCF21O43680 179 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 SSNA1O43805 119 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 ARL6IP5O75915 188 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 C1QBP02746 253 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 RLN2P04090 185 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 OR10J4P0C629 311 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 PVALBP20472 110 aaPredicted RBP5.5□□□□□ -1.53
VPS53-217ENST00000575100 GLP1RP43220 463 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 RPL32P62910 135 aaKnown RBP5.5□□□□□ -1.53
VPS53-217ENST00000575100 PSG7Q13046 419 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 ZNF260Q3ZCT1 412 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 OR2T2Q6IF00 324 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 COMMD7Q86VX2 200 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 LYPD6Q86Y78 171 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 OR5AS1Q8N127 324 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 WFDC11Q8NEX6 87 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 KBTBD8Q8NFY9 601 aa5.5□□□□□ -1.53
VPS53-217ENST00000575100 KLF14Q8TD94 323 aaPredicted RBP5.5□□□□□ -1.53
VPS53-217ENST00000575100 NPRL2Q8WTW4 380 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms