RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 SRSF12Q8WXF0 261 aaKnown RBP14.3□□□□□ -0.12
CCDC40-213ENST00000574933 RRNAD1Q96FB5 475 aaKnown RBP14.3□□□□□ -0.12
CCDC40-213ENST00000574933 TMEM68Q96MH6 324 aa14.3□□□□□ -0.12
CCDC40-213ENST00000574933 NOL4LQ96MY1 436 aaPredicted RBP14.3□□□□□ -0.12
CCDC40-213ENST00000574933 GON7Q9BXV9 100 aa14.3□□□□□ -0.12
CCDC40-213ENST00000574933 TMEM14BQ9NUH8 114 aa14.3□□□□□ -0.12
CCDC40-213ENST00000574933 PRR13Q9NZ81 148 aa14.3□□□□□ -0.12
CCDC40-213ENST00000574933 PRNDQ9UKY0 176 aa14.3□□□□□ -0.12
CCDC40-213ENST00000574933 A0A0G2JRQ6 117 aa14.29□□□□□ -0.12
CCDC40-213ENST00000574933 C15orf61A6NNL5 157 aa14.29□□□□□ -0.12
CCDC40-213ENST00000574933 INMT-MINDY4F8WBC2 141 aa14.29□□□□□ -0.12
CCDC40-213ENST00000574933 SNAPC5O75971 98 aa14.29□□□□□ -0.12
CCDC40-213ENST00000574933 NMSQ5H8A3 153 aa14.29□□□□□ -0.12
CCDC40-213ENST00000574933 ZNF429Q86V71 674 aa14.29□□□□□ -0.12
CCDC40-213ENST00000574933 CASTOR1Q8WTX7 329 aa14.29□□□□□ -0.12
CCDC40-213ENST00000574933 MITD1Q8WV92 249 aa14.29□□□□□ -0.12
CCDC40-213ENST00000574933 MDFIQ99750 246 aa14.29□□□□□ -0.12
CCDC40-213ENST00000574933 PARP11Q9NR21 331 aa14.29□□□□□ -0.12
CCDC40-213ENST00000574933 FKBP11Q9NYL4 201 aa14.29□□□□□ -0.12
CCDC40-213ENST00000574933 FOXA2Q9Y261 457 aaPredicted RBP14.29□□□□□ -0.12
CCDC40-213ENST00000574933 A0A0B4J293 547 aa14.28□□□□□ -0.12
CCDC40-213ENST00000574933 PRAF2O60831 178 aa14.28□□□□□ -0.12
CCDC40-213ENST00000574933 SPNP16150 400 aa14.28□□□□□ -0.12
CCDC40-213ENST00000574933 PPIFP30405 207 aaKnown RBP14.28□□□□□ -0.12
CCDC40-213ENST00000574933 RPL27AP46776 148 aaKnown RBP14.28□□□□□ -0.12
CCDC40-213ENST00000574933 RAB25P57735 213 aa14.28□□□□□ -0.12
CCDC40-213ENST00000574933 GNB1P62873 340 aa14.28□□□□□ -0.12
CCDC40-213ENST00000574933 TMEM267Q0VDI3 215 aaPredicted RBP14.28□□□□□ -0.12
CCDC40-213ENST00000574933 THOC7Q6I9Y2 204 aaKnown RBP14.28□□□□□ -0.12
CCDC40-213ENST00000574933 LYZL2Q7Z4W2 148 aa14.28□□□□□ -0.12
CCDC40-213ENST00000574933 KLHDC1Q8N7A1 406 aa14.28□□□□□ -0.12
CCDC40-213ENST00000574933 MINDY2Q8NBR6 621 aa14.28□□□□□ -0.12
CCDC40-213ENST00000574933 OR5B3Q8NH48 314 aa14.28□□□□□ -0.12
CCDC40-213ENST00000574933 COQ8AQ8NI60 647 aa14.28□□□□□ -0.12
CCDC40-213ENST00000574933 ZNF431Q8TF32 576 aaPredicted RBP14.28□□□□□ -0.12
CCDC40-213ENST00000574933 WFDC12Q8WWY7 111 aa14.28□□□□□ -0.12
CCDC40-213ENST00000574933 GPR146Q96CH1 333 aa14.28□□□□□ -0.12
CCDC40-213ENST00000574933 COA4Q9NYJ1 87 aa14.28□□□□□ -0.12
CCDC40-213ENST00000574933 ZNF257Q9Y2Q1 563 aa14.28□□□□□ -0.12
CCDC40-213ENST00000574933 TRAV41A0A0B4J266 112 aa14.27□□□□□ -0.13
CCDC40-213ENST00000574933 A0A1B0GW64 132 aa14.27□□□□□ -0.13
CCDC40-213ENST00000574933 CGB1A6NKQ9 187 aa14.27□□□□□ -0.13
CCDC40-213ENST00000574933 E7EUB6 86 aa14.27□□□□□ -0.13
CCDC40-213ENST00000574933 SLC25A6P12236 298 aa14.27□□□□□ -0.13
CCDC40-213ENST00000574933 OR2B8PP59922 312 aa14.27□□□□□ -0.13
CCDC40-213ENST00000574933 C10orf55Q5SWW7 151 aa14.27□□□□□ -0.13
CCDC40-213ENST00000574933 Q6ZRM9 215 aa14.27□□□□□ -0.13
CCDC40-213ENST00000574933 OR52B4Q8NGK2 314 aa14.27□□□□□ -0.13
CCDC40-213ENST00000574933 OR1L8Q8NGR8 309 aa14.27□□□□□ -0.13
CCDC40-213ENST00000574933 OR4A16Q8NH70 328 aa14.27□□□□□ -0.13
CCDC40-213ENST00000574933 GRPEL2Q8TAA5 225 aa14.27□□□□□ -0.13
CCDC40-213ENST00000574933 SPIN2AQ99865 258 aa14.27□□□□□ -0.13
CCDC40-213ENST00000574933 SPIN2BQ9BPZ2 258 aa14.27□□□□□ -0.13
CCDC40-213ENST00000574933 SRSF8Q9BRL6 282 aaKnown RBP14.27□□□□□ -0.13
CCDC40-213ENST00000574933 SEC22CQ9BRL7 303 aa14.27□□□□□ -0.13
CCDC40-213ENST00000574933 FAM103A1Q9BTL3 118 aaKnown RBP14.27□□□□□ -0.13
CCDC40-213ENST00000574933 COMMD5Q9GZQ3 224 aa14.27□□□□□ -0.13
CCDC40-213ENST00000574933 LINC00527Q9UJ94 153 aa14.27□□□□□ -0.13
CCDC40-213ENST00000574933 NSG2Q9Y328 171 aa14.27□□□□□ -0.13
CCDC40-213ENST00000574933 TMED3Q9Y3Q3 217 aa14.27□□□□□ -0.13
CCDC40-213ENST00000574933 TEX50A0A1B0GTY4 177 aa14.26□□□□□ -0.13
CCDC40-213ENST00000574933 PSMB11A5LHX3 300 aa14.26□□□□□ -0.13
CCDC40-213ENST00000574933 MSGN1A6NI15 193 aa14.26□□□□□ -0.13
CCDC40-213ENST00000574933 DBX1A6NMT0 343 aa14.26□□□□□ -0.13
CCDC40-213ENST00000574933 TEX22C9J3V5 150 aa14.26□□□□□ -0.13
CCDC40-213ENST00000574933 G3V318 75 aa14.26□□□□□ -0.13
CCDC40-213ENST00000574933 IGHG4P01861 327 aa14.26□□□□□ -0.13
CCDC40-213ENST00000574933 IZUMO4Q1ZYL8 232 aa14.26□□□□□ -0.13
CCDC40-213ENST00000574933 RGS21Q2M5E4 152 aa14.26□□□□□ -0.13
CCDC40-213ENST00000574933 ASPHD1Q5U4P2 390 aa14.26□□□□□ -0.13
CCDC40-213ENST00000574933 CENPVQ7Z7K6 275 aaPredicted RBP14.26□□□□□ -0.13
CCDC40-213ENST00000574933 COMMD1Q8N668 190 aa14.26□□□□□ -0.13
CCDC40-213ENST00000574933 LFNGQ8NES3 379 aa14.26□□□□□ -0.13
CCDC40-213ENST00000574933 RNASE11Q8TAA1 199 aaKnown RBP14.26□□□□□ -0.13
CCDC40-213ENST00000574933 ABHD5Q8WTS1 349 aa14.26□□□□□ -0.13
CCDC40-213ENST00000574933 PHB2Q99623 299 aa14.26□□□□□ -0.13
CCDC40-213ENST00000574933 NDUFA4L2Q9NRX3 87 aa14.26□□□□□ -0.13
CCDC40-213ENST00000574933 OR51B2Q9Y5P1 312 aa14.26□□□□□ -0.13
CCDC40-213ENST00000574933 SNRPGP15A8MWD9 76 aa14.25□□□□□ -0.13
CCDC40-213ENST00000574933 BRI3O95415 125 aa14.25□□□□□ -0.13
CCDC40-213ENST00000574933 DHFRP00374 187 aa14.25□□□□□ -0.13
CCDC40-213ENST00000574933 IGLV1-40P01703 118 aa14.25□□□□□ -0.13
CCDC40-213ENST00000574933 MYOD1P15172 320 aa14.25□□□□□ -0.13
CCDC40-213ENST00000574933 HSPE1P61604 102 aaKnown RBP14.25□□□□□ -0.13
CCDC40-213ENST00000574933 SLC35B1P78383 322 aa14.25□□□□□ -0.13
CCDC40-213ENST00000574933 UNQ5815/PRO19632Q6UWF5 114 aa14.25□□□□□ -0.13
CCDC40-213ENST00000574933 RNF152Q8N8N0 203 aa14.25□□□□□ -0.13
CCDC40-213ENST00000574933 OR52E5Q8NH55 327 aa14.25□□□□□ -0.13
CCDC40-213ENST00000574933 ZNF747Q9BV97 191 aa14.25□□□□□ -0.13
CCDC40-213ENST00000574933 QTRT1Q9BXR0 403 aaKnown RBP14.25□□□□□ -0.13
CCDC40-213ENST00000574933 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.25□□□□□ -0.13
CCDC40-213ENST00000574933 WSB1Q9Y6I7 421 aa14.25□□□□□ -0.13
CCDC40-213ENST00000574933 A0A1B0GU03 582 aa14.24□□□□□ -0.13
CCDC40-213ENST00000574933 HAX1O00165 279 aa14.24□□□□□ -0.13
CCDC40-213ENST00000574933 SULT1A3P0DMM9 295 aa14.24□□□□□ -0.13
CCDC40-213ENST00000574933 SULT1A4P0DMN0 295 aa14.24□□□□□ -0.13
CCDC40-213ENST00000574933 KRTAP10-3P60369 221 aa14.24□□□□□ -0.13
CCDC40-213ENST00000574933 OXA1LQ15070 435 aa14.24□□□□□ -0.13
CCDC40-213ENST00000574933 ECSCRQ19T08 205 aa14.24□□□□□ -0.13
CCDC40-213ENST00000574933 PDLIM3Q53GG5 364 aaPredicted RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms