RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 RSRP1Q9BUV0 290 aa15.47■□□□□ 0.07
NUP88-204ENST00000572290 CCDC59Q9P031 241 aaKnown RBP15.47■□□□□ 0.07
NUP88-204ENST00000572290 MTFP1Q9UDX5 166 aa15.47■□□□□ 0.07
NUP88-204ENST00000572290 TRAV3A0A0B4J244 114 aa15.46■□□□□ 0.07
NUP88-204ENST00000572290 RPA2P15927 270 aa15.46■□□□□ 0.07
NUP88-204ENST00000572290 SLC38A6Q8IZM9 456 aa15.46■□□□□ 0.07
NUP88-204ENST00000572290 NECAP1Q8NC96 275 aa15.46■□□□□ 0.07
NUP88-204ENST00000572290 FCAMRQ8WWV6 532 aa15.46■□□□□ 0.07
NUP88-204ENST00000572290 OR4C12Q96R67 309 aa15.46■□□□□ 0.07
NUP88-204ENST00000572290 ELOVL1Q9BW60 279 aa15.46■□□□□ 0.07
NUP88-204ENST00000572290 ZNF256Q9Y2P7 627 aaPredicted RBP15.46■□□□□ 0.07
NUP88-204ENST00000572290 TGP01266 2768 aa15.46■□□□□ 0.06
NUP88-204ENST00000572290 MARCH11A6NNE9 402 aa15.45■□□□□ 0.06
NUP88-204ENST00000572290 OR2J3O76001 311 aa15.45■□□□□ 0.06
NUP88-204ENST00000572290 TRBV12-3P01733 135 aa15.45■□□□□ 0.06
NUP88-204ENST00000572290 CD3DP04234 171 aa15.45■□□□□ 0.06
NUP88-204ENST00000572290 CRYGCP07315 174 aa15.45■□□□□ 0.06
NUP88-204ENST00000572290 FGF2P09038 288 aa15.45■□□□□ 0.06
NUP88-204ENST00000572290 AREGP15514 252 aa15.45■□□□□ 0.06
NUP88-204ENST00000572290 TBPP20226 339 aa15.45■□□□□ 0.06
NUP88-204ENST00000572290 PSMB6P28072 239 aa15.45■□□□□ 0.06
NUP88-204ENST00000572290 OR2B8PP59922 312 aa15.45■□□□□ 0.06
NUP88-204ENST00000572290 EXOSC2Q13868 293 aaKnown RBP15.45■□□□□ 0.06
NUP88-204ENST00000572290 KLF5Q13887 457 aaPredicted RBP15.45■□□□□ 0.06
NUP88-204ENST00000572290 ZNF585BQ52M93 769 aa15.45■□□□□ 0.06
NUP88-204ENST00000572290 C19orf35Q6ZS72 473 aa15.45■□□□□ 0.06
NUP88-204ENST00000572290 COMMD5Q9GZQ3 224 aa15.45■□□□□ 0.06
NUP88-204ENST00000572290 CGB1A6NKQ9 187 aa15.44■□□□□ 0.06
NUP88-204ENST00000572290 GABARAPH6UMI1 98 aa15.44■□□□□ 0.06
NUP88-204ENST00000572290 LY86O95711 162 aa15.44■□□□□ 0.06
NUP88-204ENST00000572290 DHFRP00374 187 aa15.44■□□□□ 0.06
NUP88-204ENST00000572290 CTRB1P17538 263 aa15.44■□□□□ 0.06
NUP88-204ENST00000572290 MRPS10P82664 201 aaKnown RBP15.44■□□□□ 0.06
NUP88-204ENST00000572290 CTRB2Q6GPI1 263 aa15.44■□□□□ 0.06
NUP88-204ENST00000572290 TBC1D26Q86UD7 250 aa15.44■□□□□ 0.06
NUP88-204ENST00000572290 ARRDC1Q8N5I2 433 aa15.44■□□□□ 0.06
NUP88-204ENST00000572290 TMEM229BQ8NBD8 167 aa15.44■□□□□ 0.06
NUP88-204ENST00000572290 H3BMQ9 156 aa15.43■□□□□ 0.06
NUP88-204ENST00000572290 KRASP01116 189 aa15.43■□□□□ 0.06
NUP88-204ENST00000572290 TAS2R19P59542 299 aa15.43■□□□□ 0.06
NUP88-204ENST00000572290 TATDN3Q17R31 274 aa15.43■□□□□ 0.06
NUP88-204ENST00000572290 RPEL1Q2QD12 228 aa15.43■□□□□ 0.06
NUP88-204ENST00000572290 C15orf32Q32M92 178 aa15.43■□□□□ 0.06
NUP88-204ENST00000572290 LHFPL1Q86WI0 220 aa15.43■□□□□ 0.06
NUP88-204ENST00000572290 OR6Q1Q8NGQ2 317 aa15.43■□□□□ 0.06
NUP88-204ENST00000572290 ISOC1Q96CN7 298 aa15.43■□□□□ 0.06
NUP88-204ENST00000572290 DIRAS2Q96HU8 199 aa15.43■□□□□ 0.06
NUP88-204ENST00000572290 FANCD2OSQ96PS1 177 aa15.43■□□□□ 0.06
NUP88-204ENST00000572290 FAM212BQ9NTI7 297 aaPredicted RBP15.43■□□□□ 0.06
NUP88-204ENST00000572290 FBXL7Q9UJT9 491 aa15.43■□□□□ 0.06
NUP88-204ENST00000572290 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.42■□□□□ 0.06
NUP88-204ENST00000572290 REG1AP05451 166 aa15.42■□□□□ 0.06
NUP88-204ENST00000572290 DEFA4P12838 97 aa15.42■□□□□ 0.06
NUP88-204ENST00000572290 PGAM2P15259 253 aa15.42■□□□□ 0.06
NUP88-204ENST00000572290 HIST1H1BP16401 226 aaKnown RBP15.42■□□□□ 0.06
NUP88-204ENST00000572290 G6PCP35575 357 aa15.42■□□□□ 0.06
NUP88-204ENST00000572290 SYNJ2BPP57105 145 aa15.42■□□□□ 0.06
NUP88-204ENST00000572290 FAM209BQ5JX69 171 aa15.42■□□□□ 0.06
NUP88-204ENST00000572290 CADM3Q8N126 398 aa15.42■□□□□ 0.06
NUP88-204ENST00000572290 SRSF8Q9BRL6 282 aaKnown RBP15.42■□□□□ 0.06
NUP88-204ENST00000572290 QTRT1Q9BXR0 403 aaKnown RBP15.42■□□□□ 0.06
NUP88-204ENST00000572290 C6orf62Q9GZU0 229 aaPredicted RBP15.42■□□□□ 0.06
NUP88-204ENST00000572290 LSM4Q9Y4Z0 139 aaKnown RBP15.42■□□□□ 0.06
NUP88-204ENST00000572290 NDUFB8O95169 186 aa15.41■□□□□ 0.06
NUP88-204ENST00000572290 RAB3DO95716 219 aa15.41■□□□□ 0.06
NUP88-204ENST00000572290 CD74P04233 296 aa15.41■□□□□ 0.06
NUP88-204ENST00000572290 SSBP1Q04837 148 aaKnown RBP15.41■□□□□ 0.06
NUP88-204ENST00000572290 IL18Q14116 193 aa15.41■□□□□ 0.06
NUP88-204ENST00000572290 KLK9Q2XQG4 91 aa15.41■□□□□ 0.06
NUP88-204ENST00000572290 THOC7Q6I9Y2 204 aaKnown RBP15.41■□□□□ 0.06
NUP88-204ENST00000572290 STEAP1BQ6NZ63 245 aa15.41■□□□□ 0.06
NUP88-204ENST00000572290 OR9G4Q8NGQ1 327 aa15.41■□□□□ 0.06
NUP88-204ENST00000572290 ZNF486Q96H40 463 aaPredicted RBP15.41■□□□□ 0.06
NUP88-204ENST00000572290 B9D2Q9BPU9 175 aa15.41■□□□□ 0.06
NUP88-204ENST00000572290 SLIRPQ9GZT3 109 aaKnown RBP15.41■□□□□ 0.06
NUP88-204ENST00000572290 RABL2AQ9UBK7 228 aaPredicted RBP15.41■□□□□ 0.06
NUP88-204ENST00000572290 KLK9Q9UKQ9 250 aa15.41■□□□□ 0.06
NUP88-204ENST00000572290 RABL2BQ9UNT1 228 aa15.41■□□□□ 0.06
NUP88-204ENST00000572290 TEX50A0A1B0GTY4 177 aa15.4■□□□□ 0.06
NUP88-204ENST00000572290 IGLC7A0M8Q6 106 aa15.4■□□□□ 0.06
NUP88-204ENST00000572290 BMPR1BO00238 502 aa15.4■□□□□ 0.06
NUP88-204ENST00000572290 SNAPC5O75971 98 aa15.4■□□□□ 0.06
NUP88-204ENST00000572290 TRAPPC2P0DI81 140 aa15.4■□□□□ 0.06
NUP88-204ENST00000572290 TRAPPC2BP0DI82 140 aa15.4■□□□□ 0.06
NUP88-204ENST00000572290 SPNP16150 400 aa15.4■□□□□ 0.06
NUP88-204ENST00000572290 RND3P61587 244 aa15.4■□□□□ 0.06
NUP88-204ENST00000572290 CD69Q07108 199 aa15.4■□□□□ 0.06
NUP88-204ENST00000572290 OR4D10Q8NGI6 311 aa15.4■□□□□ 0.06
NUP88-204ENST00000572290 OR1L8Q8NGR8 309 aa15.4■□□□□ 0.06
NUP88-204ENST00000572290 SMIM4Q8WVI0 70 aa15.4■□□□□ 0.06
NUP88-204ENST00000572290 NSG2Q9Y328 171 aa15.4■□□□□ 0.06
NUP88-204ENST00000572290 CEPT1Q9Y6K0 416 aa15.4■□□□□ 0.06
NUP88-204ENST00000572290 IGLV11-55A0A075B6I3 123 aa15.39■□□□□ 0.05
NUP88-204ENST00000572290 CTDSPLO15194 276 aa15.39■□□□□ 0.05
NUP88-204ENST00000572290 PTBP1P26599 531 aaKnown RBP eCLIP15.39■□□□□ 0.05
NUP88-204ENST00000572290 PPP5CP53041 499 aa15.39■□□□□ 0.05
NUP88-204ENST00000572290 HSD17B13Q7Z5P4 300 aaPredicted RBP15.39■□□□□ 0.05
NUP88-204ENST00000572290 TERB2Q8NHR7 220 aa15.39■□□□□ 0.05
NUP88-204ENST00000572290 TSC22D3Q99576 134 aa15.39■□□□□ 0.05
NUP88-204ENST00000572290 PRNDQ9UKY0 176 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms