RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 GTF3AQ92664 365 aaKnown RBP12.93□□□□□ -0.34
CIITA-204ENST00000570546 IGHV2OR16-5A0A0B4J2B6 119 aa12.93□□□□□ -0.34
CIITA-204ENST00000570546 SLC17A3O00476 420 aa12.93□□□□□ -0.34
CIITA-204ENST00000570546 GLRXP35754 106 aa12.93□□□□□ -0.34
CIITA-204ENST00000570546 QRFPP83859 136 aa12.93□□□□□ -0.34
CIITA-204ENST00000570546 ALPK2Q86TB3 2170 aa12.93□□□□□ -0.34
CIITA-204ENST00000570546 FNDC1Q4ZHG4 1894 aaPredicted RBP12.93□□□□□ -0.34
CIITA-204ENST00000570546 IGKV3-7A0A075B6H7 116 aa12.92□□□□□ -0.34
CIITA-204ENST00000570546 FCGR2BP31994 310 aaPredicted RBP12.92□□□□□ -0.34
CIITA-204ENST00000570546 RPL23P62829 140 aaKnown RBP12.92□□□□□ -0.34
CIITA-204ENST00000570546 SPANXN1Q5VSR9 72 aa12.92□□□□□ -0.34
CIITA-204ENST00000570546 ZNF738Q8NE65 137 aa12.92□□□□□ -0.34
CIITA-204ENST00000570546 PRR7Q8TB68 274 aa12.92□□□□□ -0.34
CIITA-204ENST00000570546 BRWD1Q9NSI6 2320 aa12.92□□□□□ -0.34
CIITA-204ENST00000570546 IGKV1-27A0A075B6S5 117 aa12.92□□□□□ -0.34
CIITA-204ENST00000570546 TIMM23BQ5SRD1 257 aa12.92□□□□□ -0.34
CIITA-204ENST00000570546 FAM131CQ96AQ9 280 aa12.92□□□□□ -0.34
CIITA-204ENST00000570546 RSPO3Q9BXY4 272 aaPredicted RBP12.92□□□□□ -0.34
CIITA-204ENST00000570546 IFI27L2Q9H2X8 130 aa12.92□□□□□ -0.34
CIITA-204ENST00000570546 NMUP48645 174 aa12.92□□□□□ -0.34
CIITA-204ENST00000570546 RNF144BQ7Z419 303 aa12.92□□□□□ -0.34
CIITA-204ENST00000570546 PINLYPA6NC86 204 aa12.92□□□□□ -0.34
CIITA-204ENST00000570546 COMPP49747 757 aaPredicted RBP12.92□□□□□ -0.34
CIITA-204ENST00000570546 RPL24P83731 157 aaKnown RBP12.92□□□□□ -0.34
CIITA-204ENST00000570546 ATG101Q9BSB4 218 aa12.92□□□□□ -0.34
CIITA-204ENST00000570546 PPIAL4CA0A0B4J2A2 164 aa12.92□□□□□ -0.34
CIITA-204ENST00000570546 KLF7O75840 302 aaPredicted RBP12.92□□□□□ -0.34
CIITA-204ENST00000570546 PPIAL4GP0DN37 164 aa12.92□□□□□ -0.34
CIITA-204ENST00000570546 FAM201AQ5SY85 155 aa12.92□□□□□ -0.34
CIITA-204ENST00000570546 PEAR1Q5VY43 1037 aaPredicted RBP12.92□□□□□ -0.34
CIITA-204ENST00000570546 SCGB1D4Q6XE38 83 aa12.92□□□□□ -0.34
CIITA-204ENST00000570546 LINC00305Q7Z4B0 112 aa12.92□□□□□ -0.34
CIITA-204ENST00000570546 MOSP00540 346 aa12.91□□□□□ -0.34
CIITA-204ENST00000570546 FOLR2P14207 255 aa12.91□□□□□ -0.34
CIITA-204ENST00000570546 SLC25A33Q9BSK2 321 aa12.91□□□□□ -0.34
CIITA-204ENST00000570546 SOD3P08294 240 aa12.91□□□□□ -0.34
CIITA-204ENST00000570546 RPL13AP40429 203 aaKnown RBP12.91□□□□□ -0.34
CIITA-204ENST00000570546 HERVK_113P61574 105 aa12.91□□□□□ -0.34
CIITA-204ENST00000570546 LYRM7Q5U5X0 104 aa12.91□□□□□ -0.34
CIITA-204ENST00000570546 SIAH2O43255 324 aa12.91□□□□□ -0.34
CIITA-204ENST00000570546 RAMP3O60896 148 aa12.91□□□□□ -0.34
CIITA-204ENST00000570546 RPL7P18124 248 aaKnown RBP12.91□□□□□ -0.34
CIITA-204ENST00000570546 SRSF4Q08170 494 aaKnown RBP12.91□□□□□ -0.34
CIITA-204ENST00000570546 SRSF12Q8WXF0 261 aaKnown RBP12.91□□□□□ -0.34
CIITA-204ENST00000570546 PTPRDP23468 1912 aa12.91□□□□□ -0.34
CIITA-204ENST00000570546 KBTBD11-OT1A0A1B0GTJ5 212 aa12.91□□□□□ -0.34
CIITA-204ENST00000570546 C5orf63A6NC05 138 aa12.91□□□□□ -0.34
CIITA-204ENST00000570546 OR4C46A6NHA9 309 aa12.91□□□□□ -0.34
CIITA-204ENST00000570546 LINC00587B1AMM8 73 aa12.91□□□□□ -0.34
CIITA-204ENST00000570546 UBE2CO00762 179 aa12.91□□□□□ -0.34
CIITA-204ENST00000570546 CD40P25942 277 aa12.91□□□□□ -0.34
CIITA-204ENST00000570546 COTL1Q14019 142 aa12.91□□□□□ -0.34
CIITA-204ENST00000570546 EAF1Q96JC9 268 aaPredicted RBP12.91□□□□□ -0.34
CIITA-204ENST00000570546 IMMP2LQ96T52 175 aa12.91□□□□□ -0.34
CIITA-204ENST00000570546 LPAR2Q9HBW0 351 aa12.91□□□□□ -0.34
CIITA-204ENST00000570546 CKS2P33552 79 aa12.9□□□□□ -0.34
CIITA-204ENST00000570546 MFAP4P55083 255 aa12.9□□□□□ -0.34
CIITA-204ENST00000570546 OSR1Q8TAX0 266 aaPredicted RBP12.9□□□□□ -0.34
CIITA-204ENST00000570546 COLCA2A8K830 154 aa12.9□□□□□ -0.34
CIITA-204ENST00000570546 ZFP36L1Q07352 338 aaKnown RBP12.9□□□□□ -0.34
CIITA-204ENST00000570546 SRSF7Q16629 238 aaKnown RBP eCLIP12.9□□□□□ -0.34
CIITA-204ENST00000570546 TM4SF5O14894 197 aa12.9□□□□□ -0.34
CIITA-204ENST00000570546 CD55P08174 381 aa12.9□□□□□ -0.34
CIITA-204ENST00000570546 RBPMS2Q6ZRY4 209 aaKnown RBP12.9□□□□□ -0.34
CIITA-204ENST00000570546 GGNQ86UU5 652 aa12.9□□□□□ -0.34
CIITA-204ENST00000570546 FAM90A1Q86YD7 464 aa12.9□□□□□ -0.34
CIITA-204ENST00000570546 CLEC7AQ9BXN2 247 aa12.9□□□□□ -0.34
CIITA-204ENST00000570546 COL4A6Q14031 1691 aa12.89□□□□□ -0.35
CIITA-204ENST00000570546 FAM106CPP0CH98 169 aa12.89□□□□□ -0.35
CIITA-204ENST00000570546 ACSF3Q4G176 576 aaPredicted RBP12.89□□□□□ -0.35
CIITA-204ENST00000570546 ATOH7Q8N100 152 aa12.89□□□□□ -0.35
CIITA-204ENST00000570546 NEU1Q99519 415 aa12.89□□□□□ -0.35
CIITA-204ENST00000570546 TRAV30A0A087WSZ9 112 aa12.89□□□□□ -0.35
CIITA-204ENST00000570546 IGHV1-69-2A0A0G2JMI3 117 aa12.89□□□□□ -0.35
CIITA-204ENST00000570546 OTX1P32242 354 aaPredicted RBP12.89□□□□□ -0.35
CIITA-204ENST00000570546 PSG9Q00887 426 aa12.89□□□□□ -0.35
CIITA-204ENST00000570546 FAM216BQ8N7L0 139 aa12.89□□□□□ -0.35
CIITA-204ENST00000570546 TMEM78Q5T7P6 136 aa12.89□□□□□ -0.35
CIITA-204ENST00000570546 MIR17HGQ75NE6 70 aa12.89□□□□□ -0.35
CIITA-204ENST00000570546 MUC15Q8N387 334 aa12.89□□□□□ -0.35
CIITA-204ENST00000570546 TNFSF10P50591 281 aa12.89□□□□□ -0.35
CIITA-204ENST00000570546 GUCD1Q96NT3 240 aa12.89□□□□□ -0.35
CIITA-204ENST00000570546 HEPN1Q6WQI6 88 aa12.88□□□□□ -0.35
CIITA-204ENST00000570546 ZNF841Q6ZN19 808 aa12.88□□□□□ -0.35
CIITA-204ENST00000570546 GOLT1AQ6ZVE7 132 aa12.88□□□□□ -0.35
CIITA-204ENST00000570546 VSIRQ9H7M9 311 aa12.88□□□□□ -0.35
CIITA-204ENST00000570546 CA7P43166 264 aa12.88□□□□□ -0.35
CIITA-204ENST00000570546 HBBP68871 147 aa12.88□□□□□ -0.35
CIITA-204ENST00000570546 ELOVL5Q9NYP7 299 aa12.88□□□□□ -0.35
CIITA-204ENST00000570546 AUP1Q9Y679 476 aa12.88□□□□□ -0.35
CIITA-204ENST00000570546 KNTC1P50748 2209 aa12.88□□□□□ -0.35
CIITA-204ENST00000570546 BTF3P20290 206 aaKnown RBP12.88□□□□□ -0.35
CIITA-204ENST00000570546 GPX4P36969 197 aaPredicted RBP12.88□□□□□ -0.35
CIITA-204ENST00000570546 PTPRZ1P23471 2315 aaPredicted RBP12.88□□□□□ -0.35
CIITA-204ENST00000570546 PLAURQ03405 335 aa12.88□□□□□ -0.35
CIITA-204ENST00000570546 SS18L1O75177 396 aaPredicted RBP12.87□□□□□ -0.35
CIITA-204ENST00000570546 TFF1P04155 84 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 RNF224P0DH78 156 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 C9orf106Q8NAJ2 232 aa12.87□□□□□ -0.35
CIITA-204ENST00000570546 DCAF16Q9NXF7 216 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms