RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 C15orf32Q32M92 178 aa15.51■□□□□ 0.07
CLK3-225ENST00000569063 C11orf87Q6NUJ2 197 aa15.51■□□□□ 0.07
CLK3-225ENST00000569063 LPCAT3Q6P1A2 487 aa15.51■□□□□ 0.07
CLK3-225ENST00000569063 IL34Q6ZMJ4 242 aa15.51■□□□□ 0.07
CLK3-225ENST00000569063 DMBX1Q8NFW5 382 aa15.51■□□□□ 0.07
CLK3-225ENST00000569063 DGCR14Q96DF8 476 aaKnown RBP15.51■□□□□ 0.07
CLK3-225ENST00000569063 TMEM140Q9NV12 185 aa15.51■□□□□ 0.07
CLK3-225ENST00000569063 OR2J3O76001 311 aa15.5■□□□□ 0.07
CLK3-225ENST00000569063 DHFRP00374 187 aa15.5■□□□□ 0.07
CLK3-225ENST00000569063 NHLRC4P0CG21 123 aaPredicted RBP15.5■□□□□ 0.07
CLK3-225ENST00000569063 MYOD1P15172 320 aa15.5■□□□□ 0.07
CLK3-225ENST00000569063 CTRB1P17538 263 aa15.5■□□□□ 0.07
CLK3-225ENST00000569063 OR2B8PP59922 312 aa15.5■□□□□ 0.07
CLK3-225ENST00000569063 CTRB2Q6GPI1 263 aa15.5■□□□□ 0.07
CLK3-225ENST00000569063 CADM3Q8N126 398 aa15.5■□□□□ 0.07
CLK3-225ENST00000569063 FANCD2OSQ96PS1 177 aa15.5■□□□□ 0.07
CLK3-225ENST00000569063 SMAD5-AS1Q9Y6J3 95 aa15.5■□□□□ 0.07
CLK3-225ENST00000569063 TRAV3A0A0B4J244 114 aa15.49■□□□□ 0.07
CLK3-225ENST00000569063 BMPR1BO00238 502 aa15.49■□□□□ 0.07
CLK3-225ENST00000569063 UCP3P55916 312 aa15.49■□□□□ 0.07
CLK3-225ENST00000569063 C19orf35Q6ZS72 473 aa15.49■□□□□ 0.07
CLK3-225ENST00000569063 FCAMRQ8WWV6 532 aa15.49■□□□□ 0.07
CLK3-225ENST00000569063 SRSF8Q9BRL6 282 aaKnown RBP15.49■□□□□ 0.07
CLK3-225ENST00000569063 RSRP1Q9BUV0 290 aa15.49■□□□□ 0.07
CLK3-225ENST00000569063 COMMD5Q9GZQ3 224 aa15.49■□□□□ 0.07
CLK3-225ENST00000569063 SIGLEC8Q9NYZ4 499 aa15.49■□□□□ 0.07
CLK3-225ENST00000569063 EXTL2Q9UBQ6 330 aa15.49■□□□□ 0.07
CLK3-225ENST00000569063 FBXL7Q9UJT9 491 aa15.49■□□□□ 0.07
CLK3-225ENST00000569063 DNAH9Q9NYC9 4486 aa15.48■□□□□ 0.07
CLK3-225ENST00000569063 MARCH11A6NNE9 402 aa15.48■□□□□ 0.07
CLK3-225ENST00000569063 HIST1H1BP16401 226 aaKnown RBP15.48■□□□□ 0.07
CLK3-225ENST00000569063 LPAR6P43657 344 aa15.48■□□□□ 0.07
CLK3-225ENST00000569063 ERVK-16P61578 105 aa15.48■□□□□ 0.07
CLK3-225ENST00000569063 ZNF585BQ52M93 769 aa15.48■□□□□ 0.07
CLK3-225ENST00000569063 C15orf40Q8WUR7 153 aa15.48■□□□□ 0.07
CLK3-225ENST00000569063 FAM212BQ9NTI7 297 aaPredicted RBP15.48■□□□□ 0.07
CLK3-225ENST00000569063 KLK11Q9UBX7 282 aa15.48■□□□□ 0.07
CLK3-225ENST00000569063 DMRT1Q9Y5R6 373 aa15.48■□□□□ 0.07
CLK3-225ENST00000569063 CSN3P07498 182 aa15.47■□□□□ 0.07
CLK3-225ENST00000569063 SPCS2Q15005 226 aa15.47■□□□□ 0.07
CLK3-225ENST00000569063 HAPLN4Q86UW8 402 aa15.47■□□□□ 0.07
CLK3-225ENST00000569063 ABHD1Q96SE0 405 aa15.47■□□□□ 0.07
CLK3-225ENST00000569063 IGLV11-55A0A075B6I3 123 aa15.46■□□□□ 0.07
CLK3-225ENST00000569063 IGLC7A0M8Q6 106 aa15.46■□□□□ 0.07
CLK3-225ENST00000569063 NDUFB8O95169 186 aa15.46■□□□□ 0.07
CLK3-225ENST00000569063 REG1AP05451 166 aa15.46■□□□□ 0.07
CLK3-225ENST00000569063 RPA2P15927 270 aa15.46■□□□□ 0.07
CLK3-225ENST00000569063 S100GP29377 79 aa15.46■□□□□ 0.07
CLK3-225ENST00000569063 PHLDA2Q53GA4 152 aa15.46■□□□□ 0.07
CLK3-225ENST00000569063 SLC38A6Q8IZM9 456 aa15.46■□□□□ 0.07
CLK3-225ENST00000569063 OR52I2Q8NH67 350 aa15.46■□□□□ 0.07
CLK3-225ENST00000569063 QTRT1Q9BXR0 403 aaKnown RBP15.46■□□□□ 0.07
CLK3-225ENST00000569063 PEMTQ9UBM1 199 aa15.46■□□□□ 0.07
CLK3-225ENST00000569063 MTFP1Q9UDX5 166 aa15.46■□□□□ 0.07
CLK3-225ENST00000569063 M0QYG6 137 aa15.45■□□□□ 0.06
CLK3-225ENST00000569063 KRASP01116 189 aa15.45■□□□□ 0.06
CLK3-225ENST00000569063 DEFA4P12838 97 aa15.45■□□□□ 0.06
CLK3-225ENST00000569063 THOC7Q6I9Y2 204 aaKnown RBP15.45■□□□□ 0.06
CLK3-225ENST00000569063 CLVS1Q8IUQ0 354 aaPredicted RBP15.45■□□□□ 0.06
CLK3-225ENST00000569063 RAB2BQ8WUD1 216 aa15.45■□□□□ 0.06
CLK3-225ENST00000569063 MIXL1Q9H2W2 232 aa15.45■□□□□ 0.06
CLK3-225ENST00000569063 SORL1Q92673 2214 aa15.45■□□□□ 0.06
CLK3-225ENST00000569063 TEX50A0A1B0GTY4 177 aa15.44■□□□□ 0.06
CLK3-225ENST00000569063 PPP5D1E7EU14 171 aa15.44■□□□□ 0.06
CLK3-225ENST00000569063 H0Y980 276 aa15.44■□□□□ 0.06
CLK3-225ENST00000569063 GGCTO75223 188 aaKnown RBP15.44■□□□□ 0.06
CLK3-225ENST00000569063 IFNA6P05013 189 aa15.44■□□□□ 0.06
CLK3-225ENST00000569063 TRAPPC2P0DI81 140 aa15.44■□□□□ 0.06
CLK3-225ENST00000569063 TRAPPC2BP0DI82 140 aa15.44■□□□□ 0.06
CLK3-225ENST00000569063 TBPP20226 339 aa15.44■□□□□ 0.06
CLK3-225ENST00000569063 G6PCP35575 357 aa15.44■□□□□ 0.06
CLK3-225ENST00000569063 TMBIM6P55061 237 aa15.44■□□□□ 0.06
CLK3-225ENST00000569063 RNASE12Q5GAN4 147 aaKnown RBP15.44■□□□□ 0.06
CLK3-225ENST00000569063 RNASE10Q5GAN6 216 aaKnown RBP15.44■□□□□ 0.06
CLK3-225ENST00000569063 HSD17B13Q7Z5P4 300 aaPredicted RBP15.44■□□□□ 0.06
CLK3-225ENST00000569063 TBC1D26Q86UD7 250 aa15.44■□□□□ 0.06
CLK3-225ENST00000569063 EEF1AKMT3Q96AZ1 226 aa15.44■□□□□ 0.06
CLK3-225ENST00000569063 CCDC140Q96MF4 163 aa15.44■□□□□ 0.06
CLK3-225ENST00000569063 BCL7BQ9BQE9 202 aa15.44■□□□□ 0.06
CLK3-225ENST00000569063 RGS5O15539 181 aa15.43■□□□□ 0.06
CLK3-225ENST00000569063 CD3DP04234 171 aa15.43■□□□□ 0.06
CLK3-225ENST00000569063 PTBP1P26599 531 aaKnown RBP eCLIP15.43■□□□□ 0.06
CLK3-225ENST00000569063 MECP2P51608 486 aaKnown RBP15.43■□□□□ 0.06
CLK3-225ENST00000569063 LHFPL1Q86WI0 220 aa15.43■□□□□ 0.06
CLK3-225ENST00000569063 Q8N1Y9 231 aa15.43■□□□□ 0.06
CLK3-225ENST00000569063 ARRDC1Q8N5I2 433 aa15.43■□□□□ 0.06
CLK3-225ENST00000569063 OR10W1Q8NGF6 305 aa15.43■□□□□ 0.06
CLK3-225ENST00000569063 OR1L8Q8NGR8 309 aa15.43■□□□□ 0.06
CLK3-225ENST00000569063 CXorf58Q96LI9 332 aa15.43■□□□□ 0.06
CLK3-225ENST00000569063 NDUFA4L2Q9NRX3 87 aa15.43■□□□□ 0.06
CLK3-225ENST00000569063 TRBV7-1A0A0A6YYK4 115 aa15.42■□□□□ 0.06
CLK3-225ENST00000569063 LGALS9O00182 355 aa15.42■□□□□ 0.06
CLK3-225ENST00000569063 CTDSP2O14595 271 aa15.42■□□□□ 0.06
CLK3-225ENST00000569063 SNAPC5O75971 98 aa15.42■□□□□ 0.06
CLK3-225ENST00000569063 IGHV3-23P01764 117 aa15.42■□□□□ 0.06
CLK3-225ENST00000569063 SERPINE2P07093 398 aa15.42■□□□□ 0.06
CLK3-225ENST00000569063 CLEC19AQ6UXS0 136 aa15.42■□□□□ 0.06
CLK3-225ENST00000569063 GPHB5Q86YW7 130 aa15.42■□□□□ 0.06
CLK3-225ENST00000569063 LAX1Q8IWV1 398 aa15.42■□□□□ 0.06
CLK3-225ENST00000569063 DYNC2LI1Q8TCX1 351 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms