RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 STAG3L4Q8TBR4 150 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 C18orf32Q8TCD1 76 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 OR5P3Q8WZ94 311 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 MAL2Q969L2 176 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 GNPNAT1Q96EK6 184 aaPredicted RBP2.67□□□□□ -1.98
VPS35-208ENST00000568612 PELI1Q96FA3 418 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 DYNLL2Q96FJ2 89 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 S100A16Q96FQ6 103 aaKnown RBP2.67□□□□□ -1.98
VPS35-208ENST00000568612 TMEM101Q96IK0 257 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 SEC22AQ96IW7 307 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 SGK494Q96LW2 274 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 OR4C12Q96R67 309 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 GPR21Q99679 349 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 HSD17B10Q99714 261 aaKnown RBP2.67□□□□□ -1.98
VPS35-208ENST00000568612 RARRES2Q99969 163 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 TM2D1Q9BX74 207 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 CHST6Q9GZX3 395 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 CST11Q9H112 138 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 CISD1Q9NZ45 108 aaKnown RBP2.67□□□□□ -1.98
VPS35-208ENST00000568612 LHX3Q9UBR4 397 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 SLC2A6Q9UGQ3 507 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 CD207Q9UJ71 328 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 ABT1Q9ULW3 272 aaKnown RBP2.67□□□□□ -1.98
VPS35-208ENST00000568612 B9D1Q9UPM9 204 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 FOXA2Q9Y261 457 aaPredicted RBP2.67□□□□□ -1.98
VPS35-208ENST00000568612 TRAPPC1Q9Y5R8 145 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 R4GN57 208 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 NUP205Q92621 2012 aa2.67□□□□□ -1.98
VPS35-208ENST00000568612 PAPPA2Q9BXP8 1791 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 ZNF236Q9UL36 1845 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 TRAV1-1A0A0B4J248 108 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 A0A0B4J2E0 115 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 A0A1B0GX12 115 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 A0A1W2PRF3 423 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 A0A1W2PRM7 423 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 TMEM89A2RUT3 159 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 LINC01553A4QN01 128 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 DPRXA6NFQ7 191 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 OR4C46A6NHA9 309 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 C17orf100A8MU93 164 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 EEF1E1-BLOC1S5C9J1V9 151 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 H3BUT2 72 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 SH2D1BO14796 132 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 GPR137BO60478 399 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 ZNF324O75467 553 aaPredicted RBP2.66□□□□□ -1.98
VPS35-208ENST00000568612 HSBP1O75506 76 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 CA2P00918 260 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 TNFP01375 233 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 TTRP02766 147 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 PRH1P02810 166 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 GPX1P07203 203 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 C3orf79P0CE67 100 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 BCL2P10415 239 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 IFITM1P13164 125 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 ATP1B2P14415 290 aaPredicted RBP2.66□□□□□ -1.98
VPS35-208ENST00000568612 MYOD1P15172 320 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 IGLL1P15814 213 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 VDAC1P21796 283 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 GATA2P23769 480 aaPredicted RBP2.66□□□□□ -1.98
VPS35-208ENST00000568612 PSMB4P28070 264 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 RPL12P30050 165 aaKnown RBP2.66□□□□□ -1.98
VPS35-208ENST00000568612 FCGR2CP31995 323 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 PRDX2P32119 198 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 NSG1P42857 185 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 CRYBA2P53672 197 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 EMP1P54849 157 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 POU3F1Q03052 451 aaPredicted RBP2.66□□□□□ -1.98
VPS35-208ENST00000568612 ZNF85Q03923 595 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 ATP5G2Q06055 141 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 MYBPHQ13203 477 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 IL15RAQ13261 267 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 PPP1R1AQ13522 171 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 ZNF74Q16587 644 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 RPEL1Q2QD12 228 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 Q499Y3 187 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 OR10J3Q5JRS4 329 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 MEIG1Q5JSS6 88 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 SPANXN4Q5MJ08 99 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 FAM27D1Q5T7N8 215 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 TEX36Q5VZQ5 186 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 FAM219BQ5XKK7 198 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 NCBP2-AS2Q69YL0 99 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 DUX4L9Q6RFH8 374 aaPredicted RBP2.66□□□□□ -1.98
VPS35-208ENST00000568612 FAM159AQ6UWV7 190 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 STAC2Q6ZMT1 411 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 LINC00336Q6ZUF6 198 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 FGFRL1Q8N441 504 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 TMEM86BQ8N661 226 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 RBMXL3Q8N7X1 1067 aaKnown RBP2.66□□□□□ -1.98
VPS35-208ENST00000568612 SCCPDHQ8NBX0 429 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 OR1L8Q8NGR8 309 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 SGMS2Q8NHU3 365 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 PGLYRP3Q96LB9 341 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 PRADC1Q9BSG0 188 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 SFXN3Q9BWM7 321 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 OR2H1Q9GZK4 316 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 C6orf106Q9H6K1 298 aaPredicted RBP2.66□□□□□ -1.98
VPS35-208ENST00000568612 NRN1Q9NPD7 142 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 ACER3Q9NUN7 267 aa2.66□□□□□ -1.98
VPS35-208ENST00000568612 OCIAD1Q9NX40 245 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms