RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 SRSF8Q9BRL6 282 aaKnown RBP12.67□□□□□ -0.38
CLN3-231ENST00000568422 IGLV11-55A0A075B6I3 123 aa12.66□□□□□ -0.38
CLN3-231ENST00000568422 TMEM213A2RRL7 107 aa12.66□□□□□ -0.38
CLN3-231ENST00000568422 IGHV3-23P01764 117 aa12.66□□□□□ -0.38
CLN3-231ENST00000568422 TAS2R31P59538 309 aa12.66□□□□□ -0.38
CLN3-231ENST00000568422 CATR1Q13166 79 aa12.66□□□□□ -0.38
CLN3-231ENST00000568422 TIMM50Q3ZCQ8 353 aa12.66□□□□□ -0.38
CLN3-231ENST00000568422 C19orf35Q6ZS72 473 aa12.66□□□□□ -0.38
CLN3-231ENST00000568422 HOGA1Q86XE5 327 aa12.66□□□□□ -0.38
CLN3-231ENST00000568422 OR13F1Q8NGS4 319 aa12.66□□□□□ -0.38
CLN3-231ENST00000568422 SECTM1Q8WVN6 248 aa12.66□□□□□ -0.38
CLN3-231ENST00000568422 MARC2Q969Z3 335 aa12.66□□□□□ -0.38
CLN3-231ENST00000568422 FAM110AQ9BQ89 295 aa12.66□□□□□ -0.38
CLN3-231ENST00000568422 YTHDF1Q9BYJ9 559 aaKnown RBP12.66□□□□□ -0.38
CLN3-231ENST00000568422 HRASLSQ9HDD0 168 aa12.66□□□□□ -0.38
CLN3-231ENST00000568422 CCL28Q9NRJ3 127 aa12.66□□□□□ -0.38
CLN3-231ENST00000568422 THYN1Q9P016 225 aa12.66□□□□□ -0.38
CLN3-231ENST00000568422 TRAV18A0A075B6X5 111 aa12.65□□□□□ -0.38
CLN3-231ENST00000568422 CYB5BO43169 146 aa12.65□□□□□ -0.38
CLN3-231ENST00000568422 HPRT1P00492 218 aa12.65□□□□□ -0.38
CLN3-231ENST00000568422 PPYP01298 95 aa12.65□□□□□ -0.38
CLN3-231ENST00000568422 CLEC3BP05452 202 aa12.65□□□□□ -0.38
CLN3-231ENST00000568422 EDN2P20800 178 aa12.65□□□□□ -0.38
CLN3-231ENST00000568422 SDC2P34741 201 aa12.65□□□□□ -0.38
CLN3-231ENST00000568422 OR2B8PP59922 312 aa12.65□□□□□ -0.38
CLN3-231ENST00000568422 POU2AF1Q16633 256 aa12.65□□□□□ -0.38
CLN3-231ENST00000568422 TMEM61Q8N0U2 210 aa12.65□□□□□ -0.38
CLN3-231ENST00000568422 UXS1Q8NBZ7 420 aa12.65□□□□□ -0.38
CLN3-231ENST00000568422 OR52B4Q8NGK2 314 aa12.65□□□□□ -0.38
CLN3-231ENST00000568422 CD300LFQ8TDQ1 290 aa12.65□□□□□ -0.38
CLN3-231ENST00000568422 GPHA2Q96T91 129 aa12.65□□□□□ -0.38
CLN3-231ENST00000568422 WFDC10AQ9H1F0 79 aa12.65□□□□□ -0.38
CLN3-231ENST00000568422 Q9H521 79 aa12.65□□□□□ -0.38
CLN3-231ENST00000568422 DIABLOQ9NR28 239 aa12.65□□□□□ -0.38
CLN3-231ENST00000568422 TRAV25A0A0B4J276 109 aa12.64□□□□□ -0.39
CLN3-231ENST00000568422 TNFSF12O43508 249 aa12.64□□□□□ -0.39
CLN3-231ENST00000568422 TMEM127O75204 238 aa12.64□□□□□ -0.39
CLN3-231ENST00000568422 NQO2P16083 231 aa12.64□□□□□ -0.39
CLN3-231ENST00000568422 CBX5P45973 191 aa12.64□□□□□ -0.39
CLN3-231ENST00000568422 THOC7Q6I9Y2 204 aaKnown RBP12.64□□□□□ -0.39
CLN3-231ENST00000568422 GVQW1Q8N7I0 195 aa12.64□□□□□ -0.39
CLN3-231ENST00000568422 CACNG8Q8WXS5 425 aa12.64□□□□□ -0.39
CLN3-231ENST00000568422 BORCS5Q969J3 196 aa12.64□□□□□ -0.39
CLN3-231ENST00000568422 COMMD5Q9GZQ3 224 aa12.64□□□□□ -0.39
CLN3-231ENST00000568422 SLC5A7Q9GZV3 580 aa12.64□□□□□ -0.39
CLN3-231ENST00000568422 PLEKHA2Q9HB19 425 aa12.64□□□□□ -0.39
CLN3-231ENST00000568422 MLXQ9UH92 298 aa12.64□□□□□ -0.39
CLN3-231ENST00000568422 HYDINQ4G0P3 5121 aa12.63□□□□□ -0.39
CLN3-231ENST00000568422 CGB1A6NKQ9 187 aa12.63□□□□□ -0.39
CLN3-231ENST00000568422 SULT1C2O00338 296 aa12.63□□□□□ -0.39
CLN3-231ENST00000568422 REG1AP05451 166 aa12.63□□□□□ -0.39
CLN3-231ENST00000568422 C8orf88P0DMB2 117 aa12.63□□□□□ -0.39
CLN3-231ENST00000568422 ELLP55199 621 aaPredicted RBP12.63□□□□□ -0.39
CLN3-231ENST00000568422 ZNF502Q8TBZ5 544 aa12.63□□□□□ -0.39
CLN3-231ENST00000568422 GIMAP1Q8WWP7 306 aa12.63□□□□□ -0.39
CLN3-231ENST00000568422 SLC25A38Q96DW6 304 aa12.63□□□□□ -0.39
CLN3-231ENST00000568422 AUNIPQ9H7T9 357 aa12.63□□□□□ -0.39
CLN3-231ENST00000568422 MRPL27Q9P0M9 148 aaKnown RBP12.63□□□□□ -0.39
CLN3-231ENST00000568422 UFC1Q9Y3C8 167 aa12.63□□□□□ -0.39
CLN3-231ENST00000568422 S4R3C0 116 aa12.63□□□□□ -0.39
CLN3-231ENST00000568422 IGLC7A0M8Q6 106 aa12.62□□□□□ -0.39
CLN3-231ENST00000568422 MFSD2BA6NFX1 497 aa12.62□□□□□ -0.39
CLN3-231ENST00000568422 UPK2O00526 184 aa12.62□□□□□ -0.39
CLN3-231ENST00000568422 MYOD1P15172 320 aa12.62□□□□□ -0.39
CLN3-231ENST00000568422 PTBP1P26599 531 aaKnown RBP eCLIP12.62□□□□□ -0.39
CLN3-231ENST00000568422 MXD1Q05195 221 aa12.62□□□□□ -0.39
CLN3-231ENST00000568422 IDNKQ5T6J7 187 aa12.62□□□□□ -0.39
CLN3-231ENST00000568422 RBPMS2Q6ZRY4 209 aaKnown RBP12.62□□□□□ -0.39
CLN3-231ENST00000568422 HSD17B13Q7Z5P4 300 aaPredicted RBP12.62□□□□□ -0.39
CLN3-231ENST00000568422 OR5AP2Q8NGF4 316 aa12.62□□□□□ -0.39
CLN3-231ENST00000568422 OR5H6Q8NGV6 325 aa12.62□□□□□ -0.39
CLN3-231ENST00000568422 GGTLC1Q9BX51 225 aa12.62□□□□□ -0.39
CLN3-231ENST00000568422 QTRT1Q9BXR0 403 aaKnown RBP12.62□□□□□ -0.39
CLN3-231ENST00000568422 LOC102724200A0A096LPH7 203 aaPredicted RBP12.61□□□□□ -0.39
CLN3-231ENST00000568422 SCAF4O95104 1147 aaKnown RBP12.61□□□□□ -0.39
CLN3-231ENST00000568422 PTHLHP12272 177 aa12.61□□□□□ -0.39
CLN3-231ENST00000568422 TM4SF20Q53R12 229 aa12.61□□□□□ -0.39
CLN3-231ENST00000568422 ZNF773Q6PK81 442 aa12.61□□□□□ -0.39
CLN3-231ENST00000568422 PLET1Q6UQ28 207 aa12.61□□□□□ -0.39
CLN3-231ENST00000568422 BTNL8Q6UX41 500 aa12.61□□□□□ -0.39
CLN3-231ENST00000568422 DMBX1Q8NFW5 382 aa12.61□□□□□ -0.39
CLN3-231ENST00000568422 VN1R17PQ8TDU5 208 aa12.61□□□□□ -0.39
CLN3-231ENST00000568422 TMEM140Q9NV12 185 aa12.61□□□□□ -0.39
CLN3-231ENST00000568422 COMMD9Q9P000 198 aa12.61□□□□□ -0.39
CLN3-231ENST00000568422 ATP6V1G2O95670 118 aa12.6□□□□□ -0.39
CLN3-231ENST00000568422 CLEC2LP0C7M8 214 aa12.6□□□□□ -0.39
CLN3-231ENST00000568422 GPR183P32249 361 aa12.6□□□□□ -0.39
CLN3-231ENST00000568422 FXYD4P59646 89 aa12.6□□□□□ -0.39
CLN3-231ENST00000568422 ZNF585BQ52M93 769 aa12.6□□□□□ -0.39
CLN3-231ENST00000568422 UNQ9165/PRO28630Q6UXU0 137 aa12.6□□□□□ -0.39
CLN3-231ENST00000568422 ZNF818PQ6ZRF7 136 aa12.6□□□□□ -0.39
CLN3-231ENST00000568422 SLC38A6Q8IZM9 456 aa12.6□□□□□ -0.39
CLN3-231ENST00000568422 OR1L6Q8NGR2 347 aa12.6□□□□□ -0.39
CLN3-231ENST00000568422 OR51H1Q8NH63 302 aa12.6□□□□□ -0.39
CLN3-231ENST00000568422 ATP6V0BQ99437 205 aa12.6□□□□□ -0.39
CLN3-231ENST00000568422 ZNF436Q9C0F3 470 aaPredicted RBP12.6□□□□□ -0.39
CLN3-231ENST00000568422 C5orf66Q9H5L9 145 aa12.6□□□□□ -0.39
CLN3-231ENST00000568422 LOC100506127A0A0U1RQW1 187 aa12.59□□□□□ -0.39
CLN3-231ENST00000568422 SERPINE2P07093 398 aa12.59□□□□□ -0.39
CLN3-231ENST00000568422 HERV-K104P61576 105 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms