RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 OR5AP2Q8NGF4 316 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 MARC2Q969Z3 335 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 SLC25A38Q96DW6 304 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 S100A16Q96FQ6 103 aaKnown RBP11.26□□□□□ -0.61
CLN3-222ENST00000566083 FANCD2OSQ96PS1 177 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 AUNIPQ9H7T9 357 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 PLEKHA2Q9HB19 425 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 DMRT1Q9Y5R6 373 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 DYNC2H1Q8NCM8 4307 aaKnown RBP11.26□□□□□ -0.61
CLN3-222ENST00000566083 A8MWP6 167 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 OR11H12B2RN74 326 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 TNFSF12O43508 249 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 AREGP15514 252 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 ZNF57Q68EA5 555 aaPredicted RBP11.26□□□□□ -0.61
CLN3-222ENST00000566083 ZFAND6Q6FIF0 208 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 CLEC19AQ6UXS0 136 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 ADAMTSL5Q6ZMM2 481 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 GVQW1Q8N7I0 195 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 OR5H6Q8NGV6 325 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 HIPK2Q9H2X6 1198 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 PLEKHA3Q9HB20 300 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 COMMD9Q9P000 198 aa11.26□□□□□ -0.61
CLN3-222ENST00000566083 IGLV11-55A0A075B6I3 123 aa11.25□□□□□ -0.61
CLN3-222ENST00000566083 TRAV25A0A0B4J276 109 aa11.25□□□□□ -0.61
CLN3-222ENST00000566083 ZNF320A2RRD8 509 aa11.25□□□□□ -0.61
CLN3-222ENST00000566083 E7EUB6 86 aa11.25□□□□□ -0.61
CLN3-222ENST00000566083 XRCC3O43542 346 aa11.25□□□□□ -0.61
CLN3-222ENST00000566083 NDUFB8O95169 186 aa11.25□□□□□ -0.61
CLN3-222ENST00000566083 HERV-K104P61576 105 aa11.25□□□□□ -0.61
CLN3-222ENST00000566083 ERVK-16P61578 105 aa11.25□□□□□ -0.61
CLN3-222ENST00000566083 CCDC140Q96MF4 163 aa11.25□□□□□ -0.61
CLN3-222ENST00000566083 IFT46Q9NQC8 304 aa11.25□□□□□ -0.61
CLN3-222ENST00000566083 DNAH7Q8WXX0 4024 aa11.25□□□□□ -0.61
CLN3-222ENST00000566083 SULT1C2O00338 296 aa11.24□□□□□ -0.61
CLN3-222ENST00000566083 UPK2O00526 184 aa11.24□□□□□ -0.61
CLN3-222ENST00000566083 HLA-AP01891 365 aaKnown RBP11.24□□□□□ -0.61
CLN3-222ENST00000566083 CLEC3BP05452 202 aa11.24□□□□□ -0.61
CLN3-222ENST00000566083 CLEC2LP0C7M8 214 aa11.24□□□□□ -0.61
CLN3-222ENST00000566083 PTBP1P26599 531 aaKnown RBP eCLIP11.24□□□□□ -0.61
CLN3-222ENST00000566083 ELLP55199 621 aaPredicted RBP11.24□□□□□ -0.61
CLN3-222ENST00000566083 FXYD4P59646 89 aa11.24□□□□□ -0.61
CLN3-222ENST00000566083 OR2B8PP59922 312 aa11.24□□□□□ -0.61
CLN3-222ENST00000566083 KCTD21Q4G0X4 260 aa11.24□□□□□ -0.61
CLN3-222ENST00000566083 AADACL3Q5VUY0 350 aa11.24□□□□□ -0.61
CLN3-222ENST00000566083 DHRS11Q6UWP2 260 aa11.24□□□□□ -0.61
CLN3-222ENST00000566083 CADM3Q8N126 398 aa11.24□□□□□ -0.61
CLN3-222ENST00000566083 DMBX1Q8NFW5 382 aa11.24□□□□□ -0.61
CLN3-222ENST00000566083 QTRT1Q9BXR0 403 aaKnown RBP11.24□□□□□ -0.61
CLN3-222ENST00000566083 SRD5A3Q9H8P0 318 aa11.24□□□□□ -0.61
CLN3-222ENST00000566083 UFC1Q9Y3C8 167 aa11.24□□□□□ -0.61
CLN3-222ENST00000566083 A0A1B0GW64 132 aa11.23□□□□□ -0.61
CLN3-222ENST00000566083 CD7P09564 240 aa11.23□□□□□ -0.61
CLN3-222ENST00000566083 MYOD1P15172 320 aa11.23□□□□□ -0.61
CLN3-222ENST00000566083 NEDD8Q15843 81 aa11.23□□□□□ -0.61
CLN3-222ENST00000566083 ZNF818PQ6ZRF7 136 aa11.23□□□□□ -0.61
CLN3-222ENST00000566083 CMTM1Q8IZ96 169 aa11.23□□□□□ -0.61
CLN3-222ENST00000566083 DEFB125Q8N687 156 aa11.23□□□□□ -0.61
CLN3-222ENST00000566083 UXS1Q8NBZ7 420 aa11.23□□□□□ -0.61
CLN3-222ENST00000566083 VN1R17PQ8TDU5 208 aa11.23□□□□□ -0.61
CLN3-222ENST00000566083 ATP6V0BQ99437 205 aa11.23□□□□□ -0.61
CLN3-222ENST00000566083 VCX3AQ9NNX9 186 aa11.23□□□□□ -0.61
CLN3-222ENST00000566083 TMEM140Q9NV12 185 aa11.23□□□□□ -0.61
CLN3-222ENST00000566083 MRPL27Q9P0M9 148 aaKnown RBP11.23□□□□□ -0.61
CLN3-222ENST00000566083 IGLC7A0M8Q6 106 aa11.22□□□□□ -0.61
CLN3-222ENST00000566083 TMEM213A2RRL7 107 aa11.22□□□□□ -0.61
CLN3-222ENST00000566083 S100GP29377 79 aa11.22□□□□□ -0.61
CLN3-222ENST00000566083 TAS2R46P59540 309 aa11.22□□□□□ -0.61
CLN3-222ENST00000566083 UBE2NLQ5JXB2 153 aa11.22□□□□□ -0.61
CLN3-222ENST00000566083 PLET1Q6UQ28 207 aa11.22□□□□□ -0.61
CLN3-222ENST00000566083 RBPMS2Q6ZRY4 209 aaKnown RBP11.22□□□□□ -0.61
CLN3-222ENST00000566083 TMEM17Q86X19 198 aa11.22□□□□□ -0.61
CLN3-222ENST00000566083 OR52B4Q8NGK2 314 aa11.22□□□□□ -0.61
CLN3-222ENST00000566083 OR1L6Q8NGR2 347 aa11.22□□□□□ -0.61
CLN3-222ENST00000566083 OR51H1Q8NH63 302 aa11.22□□□□□ -0.61
CLN3-222ENST00000566083 WDR89Q96FK6 387 aaPredicted RBP11.22□□□□□ -0.61
CLN3-222ENST00000566083 GPHA2Q96T91 129 aa11.22□□□□□ -0.61
CLN3-222ENST00000566083 EHFQ9NZC4 300 aa11.22□□□□□ -0.61
CLN3-222ENST00000566083 JTBO76095 146 aa11.21□□□□□ -0.61
CLN3-222ENST00000566083 IGHV3-23P01764 117 aa11.21□□□□□ -0.61
CLN3-222ENST00000566083 TRAPPC2P0DI81 140 aa11.21□□□□□ -0.61
CLN3-222ENST00000566083 TRAPPC2BP0DI82 140 aa11.21□□□□□ -0.61
CLN3-222ENST00000566083 PTHLHP12272 177 aa11.21□□□□□ -0.61
CLN3-222ENST00000566083 F2RP25116 425 aa11.21□□□□□ -0.61
CLN3-222ENST00000566083 GNRHRP30968 328 aa11.21□□□□□ -0.61
CLN3-222ENST00000566083 TMEM69Q5SWH9 247 aa11.21□□□□□ -0.61
CLN3-222ENST00000566083 TMEM61Q8N0U2 210 aa11.21□□□□□ -0.61
CLN3-222ENST00000566083 GDPD1Q8N9F7 314 aa11.21□□□□□ -0.61
CLN3-222ENST00000566083 TSPAN14Q8NG11 270 aa11.21□□□□□ -0.61
CLN3-222ENST00000566083 OR1L8Q8NGR8 309 aa11.21□□□□□ -0.61
CLN3-222ENST00000566083 ZNF502Q8TBZ5 544 aa11.21□□□□□ -0.61
CLN3-222ENST00000566083 RNF167Q9H6Y7 350 aa11.21□□□□□ -0.61
CLN3-222ENST00000566083 FKBP11Q9NYL4 201 aa11.21□□□□□ -0.61
CLN3-222ENST00000566083 SACSQ9NZJ4 4579 aa11.2□□□□□ -0.62
CLN3-222ENST00000566083 RBMY1BA6NDE4 496 aaKnown RBP11.2□□□□□ -0.62
CLN3-222ENST00000566083 RBMY1EA6NEQ0 496 aaKnown RBP11.2□□□□□ -0.62
CLN3-222ENST00000566083 CGB1A6NKQ9 187 aa11.2□□□□□ -0.62
CLN3-222ENST00000566083 MARCH11A6NNE9 402 aa11.2□□□□□ -0.62
CLN3-222ENST00000566083 REG1AP05451 166 aa11.2□□□□□ -0.62
CLN3-222ENST00000566083 RBMY1DP0C7P1 496 aaKnown RBP11.2□□□□□ -0.62
CLN3-222ENST00000566083 C8orf88P0DMB2 117 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms