RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, human

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-215	ENST00000564353	GATA2	P23769	480 aa	Predicted RBP	11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	PDLIM3	Q53GG5	364 aa	Predicted RBP	11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	TREML4	Q6UXN2	200 aa		11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	FAM216B	Q8N7L0	139 aa		11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	CCL13	Q99616	98 aa		11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	SNHG12	Q9BXW3	62 aa		11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	IFI27L2	Q9H2X8	130 aa		11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	RYDEN	Q9NUL5	291 aa	Known RBP	11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	TNC	P24821	2201 aa		11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	PPP5D1	E7EU14	171 aa		11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	TCF23	Q7RTU1	214 aa		11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	NEIL1	Q96FI4	390 aa	Predicted RBP	11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	MGST2	Q99735	147 aa		11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	PLSCR4	Q9NRQ2	329 aa		11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	SLC25A15	Q9Y619	301 aa		11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	XKRY2	A2RUG3	117 aa		11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	LOXL3	P58215	753 aa		11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	GNB2	P62879	340 aa		11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	MLANA	Q16655	118 aa		11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	CIB3	Q96Q77	187 aa	Predicted RBP	11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	NDUFAF3	Q9BU61	184 aa		11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	HIPK2	Q9H2X6	1198 aa		11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	SEPSECS	Q9HD40	501 aa	Known RBP	11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	CALY	Q9NYX4	217 aa		11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	CHTOP	Q9Y3Y2	248 aa	Known RBP	11.13	□□□□□ -0.63
CLK3-215	ENST00000564353	LRBA	P50851	2863 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	ACACA	Q13085	2346 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	SAA2-SAA4	A0A096LPE2	208 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353		A8MWP6	167 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	SRRM5	B3KS81	715 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	SAA2	P0DJI9	122 aa	Predicted RBP	11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	ERVK-16	P61578	105 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	RBX1	P62877	108 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	CCL8	P80075	99 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	PRB3	Q04118	309 aa	Predicted RBP	11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	ACOT6	Q3I5F7	207 aa	Predicted RBP	11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	CT45A1	Q5HYN5	189 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	PIP4P1	Q86T03	277 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	CT45A3	Q8NHU0	189 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	RNASE8	Q8TDE3	154 aa	Known RBP	11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	C22orf15	Q8WYQ4	148 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	TIMM9	Q9Y5J7	89 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	SCO2	A0A1W2PP80	73 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	ZNF705G	A8MUZ8	300 aa	Predicted RBP	11.12	□□□□□ -0.63
CLK3-215	ENST00000564353		A8MXE2	369 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	C17orf112	F2Z3M2	114 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	TCF21	O43680	179 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	IGLV1-44	P01699	117 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	IGHV3-48	P01763	117 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	ATP6V1F	Q16864	119 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	PRR7	Q8TB68	274 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	PXMP4	Q9Y6I8	212 aa		11.12	□□□□□ -0.63
CLK3-215	ENST00000564353	TRBV24-1	A0A075B6N3	115 aa		11.11	□□□□□ -0.63
CLK3-215	ENST00000564353	HPRT1	P00492	218 aa		11.11	□□□□□ -0.63
CLK3-215	ENST00000564353	CGA	P01215	116 aa		11.11	□□□□□ -0.63
CLK3-215	ENST00000564353	ADH4	P08319	380 aa		11.11	□□□□□ -0.63
CLK3-215	ENST00000564353	REG1B	P48304	166 aa		11.11	□□□□□ -0.63
CLK3-215	ENST00000564353	RELB	Q01201	579 aa		11.11	□□□□□ -0.63
CLK3-215	ENST00000564353	WDR83OS	Q9Y284	106 aa		11.11	□□□□□ -0.63
CLK3-215	ENST00000564353	TPR	P12270	2363 aa	Known RBP	11.11	□□□□□ -0.63
CLK3-215	ENST00000564353	TET2	Q6N021	2002 aa	Predicted RBP	11.11	□□□□□ -0.63
CLK3-215	ENST00000564353	TRBV20OR9-2	A0A075B6H5	130 aa		11.11	□□□□□ -0.63
CLK3-215	ENST00000564353	AHRR	A9YTQ3	701 aa		11.11	□□□□□ -0.63
CLK3-215	ENST00000564353	RBFOX2	O43251	390 aa	Known RBP eCLIP	11.11	□□□□□ -0.63
CLK3-215	ENST00000564353	GFRA3	O60609	400 aa		11.11	□□□□□ -0.63
CLK3-215	ENST00000564353	KLF3	P57682	345 aa	Predicted RBP	11.11	□□□□□ -0.63
CLK3-215	ENST00000564353	TCF19	Q9Y242	345 aa		11.11	□□□□□ -0.63
CLK3-215	ENST00000564353	DSCAM	O60469	2012 aa		11.11	□□□□□ -0.63
CLK3-215	ENST00000564353	MGST3	O14880	152 aa		11.1	□□□□□ -0.63
CLK3-215	ENST00000564353	IGKV1-16	P04430	117 aa		11.1	□□□□□ -0.63
CLK3-215	ENST00000564353	MBNL2	Q5VZF2	373 aa	Known RBP	11.1	□□□□□ -0.63
CLK3-215	ENST00000564353	CENPV	Q7Z7K6	275 aa	Predicted RBP	11.1	□□□□□ -0.63
CLK3-215	ENST00000564353	FAM90A1	Q86YD7	464 aa		11.1	□□□□□ -0.63
CLK3-215	ENST00000564353	TMEM242	Q9NWH2	141 aa		11.1	□□□□□ -0.63
CLK3-215	ENST00000564353	ZNF320	A2RRD8	509 aa		11.1	□□□□□ -0.63
CLK3-215	ENST00000564353	SPINK4	O60575	86 aa		11.1	□□□□□ -0.63
CLK3-215	ENST00000564353	CD33	P20138	364 aa		11.1	□□□□□ -0.63
CLK3-215	ENST00000564353	ARSJ	Q5FYB0	599 aa	Predicted RBP	11.1	□□□□□ -0.63
CLK3-215	ENST00000564353	GGTLC1	Q9BX51	225 aa		11.1	□□□□□ -0.63
CLK3-215	ENST00000564353	RPH3AL	Q9UNE2	315 aa		11.1	□□□□□ -0.63
CLK3-215	ENST00000564353	FAM215A	Q9Y5M1	114 aa		11.1	□□□□□ -0.63
CLK3-215	ENST00000564353	SLC17A3	O00476	420 aa		11.09	□□□□□ -0.63
CLK3-215	ENST00000564353	AMBP	P02760	352 aa		11.09	□□□□□ -0.63
CLK3-215	ENST00000564353	LINC00614	P0C842	121 aa		11.09	□□□□□ -0.63
CLK3-215	ENST00000564353	HTD2	P86397	168 aa		11.09	□□□□□ -0.63
CLK3-215	ENST00000564353	C17orf58	Q2M2W7	97 aa		11.09	□□□□□ -0.63
CLK3-215	ENST00000564353	C1orf185	Q5T7R7	199 aa		11.09	□□□□□ -0.63
CLK3-215	ENST00000564353	OR4A47	Q6IF82	309 aa		11.09	□□□□□ -0.63
CLK3-215	ENST00000564353	LINC01551	Q86U37	167 aa		11.09	□□□□□ -0.63
CLK3-215	ENST00000564353	OR2T10	Q8NGZ9	312 aa		11.09	□□□□□ -0.63
CLK3-215	ENST00000564353	FAM216A	Q8WUB2	273 aa		11.09	□□□□□ -0.63
CLK3-215	ENST00000564353	C1orf159	Q96HA4	380 aa		11.09	□□□□□ -0.63
CLK3-215	ENST00000564353	MANBAL	Q9NQG1	85 aa		11.09	□□□□□ -0.63
CLK3-215	ENST00000564353	YTHDF2	Q9Y5A9	579 aa	Known RBP	11.09	□□□□□ -0.63
CLK3-215	ENST00000564353	TMEM250	H0YL14	139 aa		11.09	□□□□□ -0.63
CLK3-215	ENST00000564353	CA2	P00918	260 aa		11.09	□□□□□ -0.63
CLK3-215	ENST00000564353	HRAS	P01112	189 aa		11.09	□□□□□ -0.63
CLK3-215	ENST00000564353	FRMD6-AS1	P0C7T7	363 aa		11.09	□□□□□ -0.63
CLK3-215	ENST00000564353	IGFBP2	P18065	325 aa		11.09	□□□□□ -0.63
CLK3-215	ENST00000564353	RNF151	Q2KHN1	245 aa		11.09	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms