RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 BHLHE40O14503 412 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 LEPROTO15243 131 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 PPBPP02775 128 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 LGALS1P09382 135 aaKnown RBP0.69□□□□□ -2.3
USP3-209ENST00000558925 OR5G3P0C626 314 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 ZNF705DP0CH99 300 aaPredicted RBP0.69□□□□□ -2.3
USP3-209ENST00000558925 FAM236CP0DP71 79 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 UCHL3P15374 230 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 KCNE1P15382 129 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 CD24P25063 80 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 HLA-DMBP28068 263 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 ALDH3A1P30838 453 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 CA5AP35218 305 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 RPL28P46779 137 aaKnown RBP0.69□□□□□ -2.3
USP3-209ENST00000558925 HAAOP46952 286 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 CSN1S1P47710 185 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 SULT1A1P50225 295 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 OR4D2P58180 307 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 FXYD7P58549 80 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 TAS2R20P59543 309 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 AP3S2P59780 193 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 RAB14P61106 215 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 BATFQ16520 125 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 MIAQ16674 131 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 HIST3H3Q16695 136 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 RGS21Q2M5E4 152 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 ACOT6Q3I5F7 207 aaPredicted RBP0.69□□□□□ -2.3
USP3-209ENST00000558925 ZNF705AQ6ZN79 300 aaPredicted RBP0.69□□□□□ -2.3
USP3-209ENST00000558925 Q6ZS52 159 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 ZNF767PQ75MW2 155 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 TCF24Q7RTU0 167 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 SLC35E3Q7Z769 313 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 LHFPL1Q86WI0 220 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 LRRC28Q86X40 367 aaPredicted RBP0.69□□□□□ -2.3
USP3-209ENST00000558925 C1orf158Q8N1D5 194 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 TBC1D19Q8N5T2 526 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 ZNF283Q8N7M2 679 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 ACOT12Q8WYK0 555 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 TMA16Q96EY4 203 aaKnown RBP0.69□□□□□ -2.3
USP3-209ENST00000558925 DNAJC30Q96LL9 226 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 PRAP1Q96NZ9 151 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 TXNDC17Q9BRA2 123 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 Q9BRP9 147 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 TIMM21Q9BVV7 248 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 RNASE7Q9H1E1 156 aaKnown RBP0.69□□□□□ -2.3
USP3-209ENST00000558925 VCX3BQ9H321 246 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 FAM96AQ9H5X1 160 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.69□□□□□ -2.3
USP3-209ENST00000558925 MRPL27Q9P0M9 148 aaKnown RBP0.69□□□□□ -2.3
USP3-209ENST00000558925 PRO2289Q9P1D8 64 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 PSORS1C2Q9UIG4 136 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 AK3Q9UIJ7 227 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 HHLA3Q9XRX5 114 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 PRELID3BQ9Y3B1 194 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 VWDEQ8N2E2 1590 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 HECW2Q9P2P5 1572 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 PLXNA3P51805 1871 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 MTUS2Q5JR59 1369 aa0.69□□□□□ -2.3
USP3-209ENST00000558925 MED12LQ86YW9 2145 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 HECW1Q76N89 1606 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 PLXND1Q9Y4D7 1925 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 TRBV20OR9-2A0A075B6H5 130 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 TRAV41A0A0B4J266 112 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 GGT3PA6NGU5 568 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 OR4C46A6NHA9 309 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 SIGLEC16A6NMB1 481 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 ZNF705FA8MVS1 300 aaPredicted RBP0.68□□□□□ -2.3
USP3-209ENST00000558925 C2orf74A8MZ97 194 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 TRAPPC2LH3BP13 241 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 J3QQQ9 107 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 OVOL1O14753 267 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 PGLYRP1O75594 196 aaPredicted RBP0.68□□□□□ -2.3
USP3-209ENST00000558925 ATP5HO75947 161 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 CNIH1O95406 144 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 HLA-DRB1P01911 266 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 COL4A2P08572 1712 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 SRP19P09132 144 aaKnown RBP0.68□□□□□ -2.3
USP3-209ENST00000558925 CTXN2P0C2S0 81 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 CD79AP11912 226 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 HIST1H1TP22492 207 aaPredicted RBP0.68□□□□□ -2.3
USP3-209ENST00000558925 ANP32AP39687 249 aaKnown RBP0.68□□□□□ -2.3
USP3-209ENST00000558925 DCCP43146 1447 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 RPL5P46777 297 aaKnown RBP0.68□□□□□ -2.3
USP3-209ENST00000558925 OMPP47874 163 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 EVX1P49640 407 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 IDH3GP51553 393 aaPredicted RBP0.68□□□□□ -2.3
USP3-209ENST00000558925 CEBPGP53567 150 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 DEFA3P59666 94 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 RPL26P61254 145 aaKnown RBP0.68□□□□□ -2.3
USP3-209ENST00000558925 ERVS71-1P61550 626 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 ZNF90Q03938 601 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 SLC38A11Q08AI6 406 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 FADDQ13158 208 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 STX5Q13190 355 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 SRSF6Q13247 344 aaKnown RBP0.68□□□□□ -2.3
USP3-209ENST00000558925 GRK1Q15835 563 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 KRTAP13-4Q3LI77 160 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 PCOTHQ58A44 107 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 LYZL1Q6UWQ5 148 aa0.68□□□□□ -2.3
USP3-209ENST00000558925 LRRC25Q8N386 305 aaPredicted RBP0.68□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms