RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 FKBP2P26885 142 aaKnown RBP-0.22□□□□□ -2.44
VPS13C-205ENST00000558088 NUP62P37198 522 aaPredicted RBP-0.22□□□□□ -2.44
VPS13C-205ENST00000558088 SNAP25P60880 206 aa-0.22□□□□□ -2.44
VPS13C-205ENST00000558088 CNBPP62633 177 aaKnown RBP-0.22□□□□□ -2.44
VPS13C-205ENST00000558088 FKBP1AP62942 108 aaKnown RBP-0.22□□□□□ -2.44
VPS13C-205ENST00000558088 HIST2H3AQ71DI3 136 aa-0.22□□□□□ -2.44
VPS13C-205ENST00000558088 PHF13Q86YI8 300 aaPredicted RBP-0.22□□□□□ -2.44
VPS13C-205ENST00000558088 OR2Y1Q8NGV0 311 aa-0.22□□□□□ -2.44
VPS13C-205ENST00000558088 OR2T27Q8NH04 317 aa-0.22□□□□□ -2.44
VPS13C-205ENST00000558088 CIDECQ96AQ7 238 aaPredicted RBP-0.22□□□□□ -2.44
VPS13C-205ENST00000558088 GNPNAT1Q96EK6 184 aaPredicted RBP-0.22□□□□□ -2.44
VPS13C-205ENST00000558088 NABP2Q9BQ15 211 aa-0.22□□□□□ -2.44
VPS13C-205ENST00000558088 GINS4Q9BRT9 223 aa-0.22□□□□□ -2.44
VPS13C-205ENST00000558088 OR8D2Q9GZM6 311 aa-0.22□□□□□ -2.44
VPS13C-205ENST00000558088 NSRP1Q9H0G5 558 aaKnown RBP-0.22□□□□□ -2.44
VPS13C-205ENST00000558088 ABCC12Q96J65 1359 aa-0.22□□□□□ -2.45
VPS13C-205ENST00000558088 GREB1Q4ZG55 1949 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 KCPQ6ZWJ8 1503 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 A0A1B0GW54 56 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 C2orf70A6NJV1 201 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 M0R378 163 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 AZIN1O14977 448 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 SGCEO43556 437 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 KLF7O75840 302 aaPredicted RBP-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 YEATS4O95619 227 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 CD40LGP29965 261 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 HLA-DRB3P79483 266 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 OR4D1Q15615 310 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 CLEC12BQ2HXU8 276 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 RNASE10Q5GAN6 216 aaKnown RBP-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 DPPA3Q6W0C5 159 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 BPIFA4PQ86YQ2 179 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 EXOC3-AS1Q8N2X6 119 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 TMEM156Q8N614 296 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 OR10D3Q8NH80 312 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 RNASEH2CQ8TDP1 164 aaKnown RBP-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 C11orf40Q8WZ69 217 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 PPCDCQ96CD2 204 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 ANKRD36BP1Q96IX9 119 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 CCL13Q99616 98 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 TIPINQ9BVW5 301 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 NCOR1P1Q9H4R4 102 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 WDR54Q9H977 334 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 XAGE1AQ9HD64 81 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 GPR84Q9NQS5 396 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 PAQR5Q9NXK6 330 aaPredicted RBP-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 TAS2R4Q9NYW5 299 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 MRM2Q9UI43 246 aaKnown RBP-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 ALPK3Q96L96 1907 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 KIF27Q86VH2 1401 aa-0.23□□□□□ -2.45
VPS13C-205ENST00000558088 CHD2O14647 1828 aaKnown RBP-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 SIPA1L1O43166 1804 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 ZNF106Q9H2Y7 1883 aaKnown RBP-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 PTPRSQ13332 1948 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 TRAV1-1A0A0B4J248 108 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 H0YC42 278 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 M0R2N4 97 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 OR1I1O60431 355 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 STX10O60499 249 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 NEMFO60524 1076 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 IGHV3-7P01780 117 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 REG1AP05451 166 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 XIAPP98170 497 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 PSG9Q00887 426 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 MPV17LQ2QL34 196 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 C6orf52Q5T4I8 152 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 LPCAT4Q643R3 524 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 GRINAQ7Z429 371 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 CLECL1Q8IZS7 167 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 BLIDQ8IZY5 108 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 OR2T4Q8NH00 348 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 STOML3Q8TAV4 291 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 CCDC124Q96CT7 223 aaKnown RBP-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 CMTM5Q96DZ9 223 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 TSPAN32Q96QS1 320 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 CYTH2Q99418 400 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 BCL7BQ9BQE9 202 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 NDEL1Q9GZM8 345 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 SLC22A4Q9H015 551 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 ASCL3Q9NQ33 180 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 RASL12Q9NYN1 266 aa-0.24□□□□□ -2.45
VPS13C-205ENST00000558088 CCL25O15444 150 aa-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 NOS1APO75052 506 aaPredicted RBP-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 OTCP00480 354 aa-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 CST4P01036 141 aa-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 TPM2P07951 284 aa-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 MGST1P10620 155 aaKnown RBP-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 CRYGAP11844 174 aa-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 RPL18Q07020 188 aaKnown RBP-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 C18orf21Q32NC0 220 aaPredicted RBP-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 NKAIN1Q4KMZ8 207 aa-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 ST13P4Q8IZP2 240 aaPredicted RBP-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 OR4E2Q8NGC2 313 aa-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 OR4D11Q8NGI4 311 aa-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 OR5AK3PQ8NH89 298 aa-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 SFT2D1Q8WV19 159 aa-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 SERPINB11Q96P15 392 aa-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 BBS2Q9BXC9 721 aa-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 ULBP3Q9BZM4 244 aa-0.25□□□□□ -2.45
VPS13C-205ENST00000558088 DCSTAMPQ9H295 470 aa-0.25□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms