RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 PRSS33Q8NF86 280 aa10.23□□□□□ -0.77
LDLR-205ENST00000557933 STRADBQ9C0K7 418 aa10.23□□□□□ -0.77
LDLR-205ENST00000557933 TMEM106BQ9NUM4 274 aa10.23□□□□□ -0.77
LDLR-205ENST00000557933 TMEM30CPA0ZSE6 113 aa10.23□□□□□ -0.77
LDLR-205ENST00000557933 SRP14P37108 136 aaKnown RBP10.23□□□□□ -0.77
LDLR-205ENST00000557933 SRSF7Q16629 238 aaKnown RBP eCLIP10.23□□□□□ -0.77
LDLR-205ENST00000557933 SPRNQ5BIV9 151 aa10.23□□□□□ -0.77
LDLR-205ENST00000557933 ARSJQ5FYB0 599 aaPredicted RBP10.23□□□□□ -0.77
LDLR-205ENST00000557933 LINC00479Q96M42 142 aa10.23□□□□□ -0.77
LDLR-205ENST00000557933 FBXL7Q9UJT9 491 aa10.23□□□□□ -0.77
LDLR-205ENST00000557933 SS18L1O75177 396 aaPredicted RBP10.23□□□□□ -0.77
LDLR-205ENST00000557933 MGST1P10620 155 aaKnown RBP10.23□□□□□ -0.77
LDLR-205ENST00000557933 OR10J1P30954 320 aa10.23□□□□□ -0.77
LDLR-205ENST00000557933 MEOX1P50221 254 aa10.23□□□□□ -0.77
LDLR-205ENST00000557933 LCN12Q6JVE5 192 aa10.23□□□□□ -0.77
LDLR-205ENST00000557933 VHLLQ6RSH7 139 aa10.23□□□□□ -0.77
LDLR-205ENST00000557933 C6orf15Q6UXA7 325 aaPredicted RBP10.23□□□□□ -0.77
LDLR-205ENST00000557933 TNRC6AQ8NDV7 1962 aaKnown RBP10.23□□□□□ -0.77
LDLR-205ENST00000557933 BEND2Q8NDZ0 799 aa10.23□□□□□ -0.77
LDLR-205ENST00000557933 OR4A16Q8NH70 328 aa10.23□□□□□ -0.77
LDLR-205ENST00000557933 FAM173AQ9BQD7 235 aa10.23□□□□□ -0.77
LDLR-205ENST00000557933 MBNL3Q9NUK0 354 aaKnown RBP10.23□□□□□ -0.77
LDLR-205ENST00000557933 NAT8BQ9UHF3 227 aa10.23□□□□□ -0.77
LDLR-205ENST00000557933 DUSP13Q9UII6 198 aa10.23□□□□□ -0.77
LDLR-205ENST00000557933 IGKV3D-15A0A087WSY6 115 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 RAB4AP20338 218 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 CRYBB3P26998 211 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 ZNF134P52741 427 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 TBC1D28Q2M2D7 210 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 TPTE2P1Q5T6R2 138 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 DUX4L9Q6RFH8 374 aaPredicted RBP10.22□□□□□ -0.77
LDLR-205ENST00000557933 TMEM144Q7Z5S9 345 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 CENPVQ7Z7K6 275 aaPredicted RBP10.22□□□□□ -0.77
LDLR-205ENST00000557933 KLF14Q8TD94 323 aaPredicted RBP10.22□□□□□ -0.77
LDLR-205ENST00000557933 TMEM45BQ96B21 275 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 VAMP8Q9BV40 100 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 GOLT1BQ9Y3E0 138 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 SELENOKQ9Y6D0 94 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 TRBV6-6A0A0A6YYG2 114 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 C17orf112F2Z3M2 114 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 TCF21O43680 179 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 GPR12P47775 334 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 ERVK11-1P61568 191 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 MIR17HGQ75NE6 70 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 LRFN3Q9BTN0 628 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 B4GALT7Q9UBV7 327 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 SPTA1P02549 2419 aa10.22□□□□□ -0.77
LDLR-205ENST00000557933 RNF212BA8MTL3 300 aa10.21□□□□□ -0.77
LDLR-205ENST00000557933 IGFBP2P18065 325 aa10.21□□□□□ -0.77
LDLR-205ENST00000557933 CD24P25063 80 aa10.21□□□□□ -0.77
LDLR-205ENST00000557933 CCKARP32238 428 aa10.21□□□□□ -0.77
LDLR-205ENST00000557933 AMTP48728 403 aa10.21□□□□□ -0.77
LDLR-205ENST00000557933 UBE2NP61088 152 aaKnown RBP10.21□□□□□ -0.77
LDLR-205ENST00000557933 PQLC2Q6ZP29 291 aa10.21□□□□□ -0.77
LDLR-205ENST00000557933 HSD17B10Q99714 261 aaKnown RBP10.21□□□□□ -0.77
LDLR-205ENST00000557933 GGTLC1Q9BX51 225 aa10.21□□□□□ -0.77
LDLR-205ENST00000557933 GNB4Q9HAV0 340 aa10.21□□□□□ -0.77
LDLR-205ENST00000557933 WDR83OSQ9Y284 106 aa10.21□□□□□ -0.77
LDLR-205ENST00000557933 POLDIP2Q9Y2S7 368 aa10.21□□□□□ -0.77
LDLR-205ENST00000557933 A0A1W2PNU3 283 aaPredicted RBP10.21□□□□□ -0.78
LDLR-205ENST00000557933 DEFB108BQ8NET1 73 aa10.21□□□□□ -0.78
LDLR-205ENST00000557933 PKIBQ9C010 78 aa10.21□□□□□ -0.78
LDLR-205ENST00000557933 LPAR2Q9HBW0 351 aa10.21□□□□□ -0.78
LDLR-205ENST00000557933 TIMM9Q9Y5J7 89 aa10.21□□□□□ -0.78
LDLR-205ENST00000557933 TIMM8BQ9Y5J9 83 aaPredicted RBP10.21□□□□□ -0.78
LDLR-205ENST00000557933 TMEM210A6NLX4 147 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 TIMM8AO60220 97 aaPredicted RBP10.2□□□□□ -0.78
LDLR-205ENST00000557933 RPLP1P05386 114 aaKnown RBP10.2□□□□□ -0.78
LDLR-205ENST00000557933 P0C879 139 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 GNG10P50151 68 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 FBXW9Q5XUX1 488 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 OR5AU1Q8NGC0 362 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 BCL2L2Q92843 193 aaPredicted RBP10.2□□□□□ -0.78
LDLR-205ENST00000557933 SPRR3Q9UBC9 169 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 KIR2DL5BA0A0G2JN68 375 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 KIR2DL5BA0A0G2JPC4 375 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 C9orf172C9J069 976 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 OR7C2O60412 319 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 TYMSP04818 313 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 HTD2P86397 168 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 PSG5Q15238 335 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 MMD2Q8IY49 270 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 KIR2DL5AQ8N109 375 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 STPG3Q8N7X2 389 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 C1orf159Q96HA4 380 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 TBL2Q9Y4P3 447 aaKnown RBP10.2□□□□□ -0.78
LDLR-205ENST00000557933 VENTXO95231 258 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 ZNF146Q15072 292 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 DNLZQ5SXM8 178 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 PRR27Q6MZM9 219 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 MOB1BQ7L9L4 216 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 ST6GALNAC6Q969X2 333 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 SNRNP40Q96DI7 357 aaKnown RBP10.2□□□□□ -0.78
LDLR-205ENST00000557933 COL25A1Q9BXS0 654 aaPredicted RBP10.2□□□□□ -0.78
LDLR-205ENST00000557933 LINC00470Q9BZP3 86 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 WIPI2Q9Y4P8 454 aa10.2□□□□□ -0.78
LDLR-205ENST00000557933 MAP1AP78559 2803 aaPredicted RBP10.19□□□□□ -0.78
LDLR-205ENST00000557933 ACACAQ13085 2346 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 FAM90A26D6RGX4 464 aa10.19□□□□□ -0.78
LDLR-205ENST00000557933 DLEU1O43261 78 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms