RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 CCL3L1P16619 93 aa10.11□□□□□ -0.79
CCDC88C-211ENST00000556726 DLX1P56177 255 aa10.11□□□□□ -0.79
CCDC88C-211ENST00000556726 RHOBP62745 196 aa10.11□□□□□ -0.79
CCDC88C-211ENST00000556726 RPL31P62899 125 aaKnown RBP10.11□□□□□ -0.79
CCDC88C-211ENST00000556726 RPL19P84098 196 aaKnown RBP10.11□□□□□ -0.79
CCDC88C-211ENST00000556726 BTF3L4Q96K17 158 aa10.11□□□□□ -0.79
CCDC88C-211ENST00000556726 PAM16Q9Y3D7 125 aa10.11□□□□□ -0.79
CCDC88C-211ENST00000556726 GNG4P50150 75 aa10.1□□□□□ -0.79
CCDC88C-211ENST00000556726 PRSS8Q16651 343 aa10.1□□□□□ -0.79
CCDC88C-211ENST00000556726 CYP2G1PQ6ZSU1 146 aa10.1□□□□□ -0.79
CCDC88C-211ENST00000556726 ZBTB34Q8NCN2 500 aa10.1□□□□□ -0.79
CCDC88C-211ENST00000556726 LYPD6BQ8NI32 183 aa10.1□□□□□ -0.79
CCDC88C-211ENST00000556726 LURAP1Q96LR2 239 aa10.1□□□□□ -0.79
CCDC88C-211ENST00000556726 SSBP3Q9BWW4 388 aaPredicted RBP10.1□□□□□ -0.79
CCDC88C-211ENST00000556726 HSPB7Q9UBY9 170 aa10.1□□□□□ -0.79
CCDC88C-211ENST00000556726 NKX6-3A6NJ46 265 aa10.1□□□□□ -0.79
CCDC88C-211ENST00000556726 SNURFLB1AK76 121 aa10.1□□□□□ -0.79
CCDC88C-211ENST00000556726 SPCS3P61009 180 aa10.1□□□□□ -0.79
CCDC88C-211ENST00000556726 ACSF3Q4G176 576 aaPredicted RBP10.1□□□□□ -0.79
CCDC88C-211ENST00000556726 OR8I2Q8N0Y5 310 aa10.1□□□□□ -0.79
CCDC88C-211ENST00000556726 CLCF1Q9UBD9 225 aa10.1□□□□□ -0.79
CCDC88C-211ENST00000556726 SSUH2Q9Y2M2 353 aa10.1□□□□□ -0.79
CCDC88C-211ENST00000556726 SPTBN4Q9H254 2564 aa10.1□□□□□ -0.79
CCDC88C-211ENST00000556726 STPG3Q8N7X2 389 aa10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 NPVFQ9HCQ7 196 aa10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 DUTP33316 252 aaKnown RBP10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 UBE2L3P68036 154 aaKnown RBP10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 MORN2Q502X0 79 aa10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 GFRALQ6UXV0 394 aa10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 PQLC2Q6ZP29 291 aa10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 TGIF2LYQ8IUE0 185 aa10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 HIST3H2BBQ8N257 126 aa10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 HIST1H2BLQ99880 126 aa10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 CTDSP1Q9GZU7 261 aa10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 TRGV8A0A0C4DH27 118 aa10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 COX7A2P2O60397 106 aa10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 FOXH1O75593 365 aa10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 CNN1P51911 297 aaKnown RBP10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 ERHP84090 104 aaKnown RBP10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 HES1Q14469 280 aa10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 PEAR1Q5VY43 1037 aaPredicted RBP10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 OR10W1Q8NGF6 305 aa10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 ATG101Q9BSB4 218 aa10.09□□□□□ -0.79
CCDC88C-211ENST00000556726 CD82P27701 267 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 RANP62826 216 aaKnown RBP10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 C10orf55Q5SWW7 151 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 TMEM14EPQ6UXP3 125 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 P2RX4Q99571 388 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 SEPSECSQ9HD40 501 aaKnown RBP10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 ZNF835Q9Y2P0 537 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 ELOA3CA0A087WX78 387 aaPredicted RBP10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 SAA2-SAA4A0A096LPE2 208 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 FAM90A26D6RGX4 464 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 CNIH1O95406 144 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 SAA2P0DJI9 122 aaPredicted RBP10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 CRISP2P16562 243 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 OR4A47Q6IF82 309 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 Q6ZSR3 168 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 MIR17HGQ75NE6 70 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 GCSAMQ8N6F7 178 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 VN1R17PQ8TDU5 208 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 SCRT1Q9BWW7 348 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 SAP30LQ9HAJ7 183 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 CBLN4Q9NTU7 201 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 TANC2Q9HCD6 1990 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 IGKV1D-17A0A075B6S4 117 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 DDTP30046 118 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 UTF1Q5T230 341 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 WDR31Q8NA23 367 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 OR1L6Q8NGR2 347 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 MBD3L1Q8WWY6 194 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 NAV3Q8IVL0 2385 aa10.08□□□□□ -0.8
CCDC88C-211ENST00000556726 A0A087WWC5 75 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 HELTA6NFD8 242 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 SS18L1O75177 396 aaPredicted RBP10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 IGHV2-5P01817 119 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 IL6RP08887 468 aaPredicted RBP10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 FOXC1Q12948 553 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 TRAT1Q6PIZ9 186 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 MRPL37Q9BZE1 423 aaKnown RBP10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 FKBP11Q9NYL4 201 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 PTPRQQ9UMZ3 2332 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 CA1P00915 261 aaPredicted RBP10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 IGLV2-14P01704 120 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 DBX2Q6ZNG2 339 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 Q6ZS49 121 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 CMTM2Q8TAZ6 248 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 SRD5A3Q9H8P0 318 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 FAM90A27PA6NNH2 459 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 C15orf62A8K5M9 175 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 CXorf1O96002 111 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 CEACAM1P13688 526 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 TMEM11P17152 192 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 IL3RAP26951 378 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 ZNF295-AS1Q8N0V1 137 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 TMEM256Q8N2U0 113 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 RAB9BQ9NP90 201 aa10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 ZNF331Q9NQX6 463 aaPredicted RBP10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 MBNL3Q9NUK0 354 aaKnown RBP10.07□□□□□ -0.8
CCDC88C-211ENST00000556726 SLC25A10Q9UBX3 287 aaPredicted RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms