RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 C2orf74A8MZ97 194 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 GSTZ1O43708 216 aaPredicted RBP0.56□□□□□ -2.32
SCFD1-216ENST00000555550 STK16O75716 305 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 HAND1O96004 215 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 IGKV1-5P01602 117 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 IGHV1-69P01742 117 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 OCM2P0CE71 109 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 FGF6P10767 208 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 HIST1H1TP22492 207 aaPredicted RBP0.56□□□□□ -2.32
SCFD1-216ENST00000555550 EVX1P49640 407 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 TBPL1P62380 186 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 CCL7P80098 99 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 HOXC5Q00444 222 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 HSP90B2PQ58FF3 399 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 CLVS2Q5SYC1 327 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 DCXRQ7Z4W1 244 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 LRRC28Q86X40 367 aaPredicted RBP0.56□□□□□ -2.32
SCFD1-216ENST00000555550 LRRC25Q8N386 305 aaPredicted RBP0.56□□□□□ -2.32
SCFD1-216ENST00000555550 NATD1Q8N6N6 113 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 UBL4BQ8N7F7 174 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 CCDC112Q8NEF3 446 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 OR8B12Q8NGG6 310 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 OR2T27Q8NH04 317 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 RPS4Y2Q8TD47 263 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 KLK6Q92876 244 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 FGF13Q92913 245 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 ANKRD36BP1Q96IX9 119 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 TMEM109Q9BVC6 243 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 EIF5A2Q9GZV4 153 aaKnown RBP0.56□□□□□ -2.32
SCFD1-216ENST00000555550 CISHQ9NSE2 258 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 USE1Q9NZ43 259 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 DNAJC12Q9UKB3 198 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 GUCA1BQ9UMX6 200 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 STAB1Q9NY15 2570 aa0.56□□□□□ -2.32
SCFD1-216ENST00000555550 KMT2CQ8NEZ4 4911 aaKnown RBP0.56□□□□□ -2.32
SCFD1-216ENST00000555550 CCDC144AA2RUR9 1427 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 SCAF11Q99590 1463 aaKnown RBP0.55□□□□□ -2.32
SCFD1-216ENST00000555550 RALGAPA2Q2PPJ7 1873 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 CUL9Q8IWT3 2517 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 A0A1W2PQD3 144 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 BHLHE40O14503 412 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 PFDN6O15212 129 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 TAS2R45P59539 299 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 SLC38A11Q08AI6 406 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 PMAIP1Q13794 54 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 KISS1Q15726 138 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 HIST3H3Q16695 136 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 ACOT6Q3I5F7 207 aaPredicted RBP0.55□□□□□ -2.32
SCFD1-216ENST00000555550 FAM78BQ5VT40 261 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 GID4Q8IVV7 300 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 BAP18Q8IXM2 172 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 ZNF676Q8N7Q3 588 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 OR1L8Q8NGR8 309 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 ZNF675Q8TD23 568 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 CMTM6Q9NX76 183 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 PXMP4Q9Y6I8 212 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 EVC2Q86UK5 1308 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 ROS1P08922 2347 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 FLT4P35916 1363 aa0.55□□□□□ -2.32
SCFD1-216ENST00000555550 CAMSAP1Q5T5Y3 1602 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 RYR1P21817 5038 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 TRGV5A0A0B4J1U4 118 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 TMEM235A6NFC5 223 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 SMIM9A6NGZ8 99 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 RFPL4AA6NLU0 287 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 DISC1C4P0D8 188 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 EEF1E1-BLOC1S5C9J1V9 151 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 RFPL4AL1F8VTS6 287 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 FADS1O60427 444 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 DCTN3O75935 186 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 LYPLA2O95372 231 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 NPYP01303 97 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 IFNA16P05015 189 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 HLA-DQB2P05538 268 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 S100A6P06703 90 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 MYL12AP19105 171 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 CCR7P32248 378 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 GABRA2P47869 451 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 PLCXD2Q0VAA5 305 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 RSU1Q15404 277 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 TMEM31Q5JXX7 168 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 C9orf64Q5T6V5 341 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 AMTNQ6UX39 209 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 SLC22A24Q8N4F4 322 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 MNS1Q8NEH6 495 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 RAB2BQ8WUD1 216 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 CYGBQ8WWM9 190 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 TESCQ96BS2 214 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 TSPAN32Q96QS1 320 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 TMEM222Q9H0R3 208 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 TLNRD1Q9H1K6 362 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 IDI2-AS1Q9NZ38 188 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 SNX12Q9UMY4 172 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 PRELID1Q9Y255 219 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 ZNF532Q9HCE3 1301 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 NCOR2Q9Y618 2525 aa0.54□□□□□ -2.32
SCFD1-216ENST00000555550 KIAA2026Q5HYC2 2103 aa0.53□□□□□ -2.32
SCFD1-216ENST00000555550 IGKV2D-26A0A0A0MRZ7 120 aa0.53□□□□□ -2.32
SCFD1-216ENST00000555550 TRAV41A0A0B4J266 112 aa0.53□□□□□ -2.32
SCFD1-216ENST00000555550 IGHV1-69-2A0A0G2JMI3 117 aa0.53□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms