RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 CREBL2O60519 120 aaPredicted RBP8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 TPPPO94811 219 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 NDUFB8O95169 186 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 IGKV1-39P01597 117 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 CD74P04233 296 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 IGKV1D-39P04432 117 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 IFNA6P05013 189 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 PGAM2P15259 253 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 ECI1P42126 302 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 PPP5CP53041 499 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 UCP3P55916 312 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 IL18Q14116 193 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 C9orf66Q5T8R8 295 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 ZNF343Q6P1L6 599 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 REC114Q7Z4M0 266 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 LHFPL1Q86WI0 220 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 CMTM1Q8IZ96 169 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 TMEM229BQ8NBD8 167 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 DMBX1Q8NFW5 382 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 OR10W1Q8NGF6 305 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 MCFD2Q8NI22 146 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 CD300LFQ8TDQ1 290 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 FANCD2OSQ96PS1 177 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 PRR25Q96S07 402 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 SOSTQ9BQB4 213 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 COMMD9Q9P000 198 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 A0A0G2JLM5 398 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 TEX50A0A1B0GTY4 177 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 IGLC7A0M8Q6 106 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 DBX1A6NMT0 343 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 MARCH11A6NNE9 402 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 BRI3O95415 125 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 RAB3DO95716 219 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 IGHV3-23P01764 117 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 PSMB6P28072 239 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 MAS1LP35410 378 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 EXOSC2Q13868 293 aaKnown RBP8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 IZUMO4Q1ZYL8 232 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 SCGB2B2Q4G0G5 96 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 DEFB121Q5J5C9 76 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 STEAP1BQ6NZ63 245 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 SLC38A6Q8IZM9 456 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 OR4A5Q8NH83 315 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 SMIM4Q8WVI0 70 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 BORCS5Q969J3 196 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 GPR61Q9BZJ8 451 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 NXF2Q9GZY0 626 aaKnown RBP8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 DMRT1Q9Y5R6 373 aa8.88□□□□□ -0.99
CCDC88C-208ENST00000554165 DPPA5A6NC42 116 aa8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 NPIPB5A8MRT5 1133 aa8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 BMPR1BO00238 502 aa8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 SAP30O75446 220 aa8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 HLA-AP01891 365 aaKnown RBP8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 SYNJ2BPP57105 145 aa8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 TAS2R19P59542 299 aa8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 ATP5G2Q06055 141 aa8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 C15orf32Q32M92 178 aa8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 SP6Q3SY56 376 aa8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 LPCAT3Q6P1A2 487 aa8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 ACSM6Q6P461 480 aa8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 IL34Q6ZMJ4 242 aa8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 OR13C8Q8NGS7 320 aa8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 TERB2Q8NHR7 220 aa8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 MARCH1Q8TCQ1 289 aa8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 USMG5Q96IX5 58 aa8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 TP53RKQ96S44 253 aa8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 AIFM2Q9BRQ8 373 aa8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 RANGRFQ9HD47 186 aaPredicted RBP8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 PEF1Q9UBV8 284 aaKnown RBP8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 FBXL7Q9UJT9 491 aa8.87□□□□□ -0.99
CCDC88C-208ENST00000554165 FABP12A6NFH5 140 aa8.86□□□□□ -0.99
CCDC88C-208ENST00000554165 CTDSPLO15194 276 aa8.86□□□□□ -0.99
CCDC88C-208ENST00000554165 CRYGCP07315 174 aa8.86□□□□□ -0.99
CCDC88C-208ENST00000554165 CTRB1P17538 263 aa8.86□□□□□ -0.99
CCDC88C-208ENST00000554165 PIGPP57054 158 aa8.86□□□□□ -0.99
CCDC88C-208ENST00000554165 ERVK-16P61578 105 aa8.86□□□□□ -0.99
CCDC88C-208ENST00000554165 KLF5Q13887 457 aaPredicted RBP8.86□□□□□ -0.99
CCDC88C-208ENST00000554165 CTRB2Q6GPI1 263 aa8.86□□□□□ -0.99
CCDC88C-208ENST00000554165 ARRDC1Q8N5I2 433 aa8.86□□□□□ -0.99
CCDC88C-208ENST00000554165 NECAP1Q8NC96 275 aa8.86□□□□□ -0.99
CCDC88C-208ENST00000554165 OR4C16Q8NGL9 310 aa8.86□□□□□ -0.99
CCDC88C-208ENST00000554165 C15orf40Q8WUR7 153 aa8.86□□□□□ -0.99
CCDC88C-208ENST00000554165 SEC22AQ96IW7 307 aa8.86□□□□□ -0.99
CCDC88C-208ENST00000554165 HINT2Q9BX68 163 aa8.86□□□□□ -0.99
CCDC88C-208ENST00000554165 QTRT1Q9BXR0 403 aaKnown RBP8.86□□□□□ -0.99
CCDC88C-208ENST00000554165 COMMD5Q9GZQ3 224 aa8.86□□□□□ -0.99
CCDC88C-208ENST00000554165 ZNF257Q9Y2Q1 563 aa8.86□□□□□ -0.99
CCDC88C-208ENST00000554165 OR51B2Q9Y5P1 312 aa8.86□□□□□ -0.99
CCDC88C-208ENST00000554165 MFSD2BA6NFX1 497 aa8.85□□□□□ -0.99
CCDC88C-208ENST00000554165 FAM223BA6NKX1 122 aa8.85□□□□□ -0.99
CCDC88C-208ENST00000554165 PPP5D1E7EU14 171 aa8.85□□□□□ -0.99
CCDC88C-208ENST00000554165 GSTZ1O43708 216 aaPredicted RBP8.85□□□□□ -0.99
CCDC88C-208ENST00000554165 IGKV1-5P01602 117 aa8.85□□□□□ -0.99
CCDC88C-208ENST00000554165 TRAPPC2P0DI81 140 aa8.85□□□□□ -0.99
CCDC88C-208ENST00000554165 TRAPPC2BP0DI82 140 aa8.85□□□□□ -0.99
CCDC88C-208ENST00000554165 OR13C7P0DN81 318 aa8.85□□□□□ -0.99
CCDC88C-208ENST00000554165 TBPP20226 339 aa8.85□□□□□ -0.99
CCDC88C-208ENST00000554165 EDN2P20800 178 aa8.85□□□□□ -0.99
CCDC88C-208ENST00000554165 ZP3P21754 424 aa8.85□□□□□ -0.99
CCDC88C-208ENST00000554165 MFAP2P55001 183 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms