RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 NSG2Q9Y328 171 aa9.65□□□□□ -0.86
SHMT2-209ENST00000553949 FBXO7Q9Y3I1 522 aa9.65□□□□□ -0.86
SHMT2-209ENST00000553949 RNF114Q9Y508 228 aa9.65□□□□□ -0.86
SHMT2-209ENST00000553949 A0A0B4J293 547 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 A0A1B0GUS0 222 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 DUXBA0A1W2PPF3 345 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 DBX1A6NMT0 343 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 PRAF2O60831 178 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 DHFRP00374 187 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 OPN1MWP04001 364 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 OPN1MW2P0DN77 364 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 OPN1MW3P0DN78 364 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 EGR2P11161 476 aaPredicted RBP9.64□□□□□ -0.87
SHMT2-209ENST00000553949 MYOD1P15172 320 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 OR2B8PP59922 312 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 NMSQ5H8A3 153 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 C10orf55Q5SWW7 151 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 Q6ZRM9 215 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 STPG2Q8N412 459 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 SGMS2Q8NHU3 365 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 SRSF12Q8WXF0 261 aaKnown RBP9.64□□□□□ -0.87
SHMT2-209ENST00000553949 GPR146Q96CH1 333 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 PHB2Q99623 299 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 FAM103A1Q9BTL3 118 aaKnown RBP9.64□□□□□ -0.87
SHMT2-209ENST00000553949 COMMD5Q9GZQ3 224 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 WNT10AQ9GZT5 417 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 GPN1Q9HCN4 374 aaPredicted RBP9.64□□□□□ -0.87
SHMT2-209ENST00000553949 ZNF580Q9UK33 172 aa9.64□□□□□ -0.87
SHMT2-209ENST00000553949 MSGN1A6NI15 193 aa9.63□□□□□ -0.87
SHMT2-209ENST00000553949 C15orf61A6NNL5 157 aa9.63□□□□□ -0.87
SHMT2-209ENST00000553949 HAX1O00165 279 aa9.63□□□□□ -0.87
SHMT2-209ENST00000553949 RBMXL2O75526 392 aaKnown RBP9.63□□□□□ -0.87
SHMT2-209ENST00000553949 HOXB5P09067 269 aa9.63□□□□□ -0.87
SHMT2-209ENST00000553949 RPL27AP46776 148 aaKnown RBP9.63□□□□□ -0.87
SHMT2-209ENST00000553949 PROK1P58294 105 aa9.63□□□□□ -0.87
SHMT2-209ENST00000553949 OXA1LQ15070 435 aa9.63□□□□□ -0.87
SHMT2-209ENST00000553949 AWAT1Q58HT5 328 aa9.63□□□□□ -0.87
SHMT2-209ENST00000553949 SPIN2AQ99865 258 aa9.63□□□□□ -0.87
SHMT2-209ENST00000553949 SPIN2BQ9BPZ2 258 aa9.63□□□□□ -0.87
SHMT2-209ENST00000553949 TMEM14BQ9NUH8 114 aa9.63□□□□□ -0.87
SHMT2-209ENST00000553949 FKBP11Q9NYL4 201 aa9.63□□□□□ -0.87
SHMT2-209ENST00000553949 FOXA2Q9Y261 457 aaPredicted RBP9.63□□□□□ -0.87
SHMT2-209ENST00000553949 TMED3Q9Y3Q3 217 aa9.63□□□□□ -0.87
SHMT2-209ENST00000553949 OR51B2Q9Y5P1 312 aa9.63□□□□□ -0.87
SHMT2-209ENST00000553949 WSB1Q9Y6I7 421 aa9.63□□□□□ -0.87
SHMT2-209ENST00000553949 TRAV41A0A0B4J266 112 aa9.62□□□□□ -0.87
SHMT2-209ENST00000553949 TEX50A0A1B0GTY4 177 aa9.62□□□□□ -0.87
SHMT2-209ENST00000553949 A0A1B0GW64 132 aa9.62□□□□□ -0.87
SHMT2-209ENST00000553949 SNRPGP15A8MWD9 76 aa9.62□□□□□ -0.87
SHMT2-209ENST00000553949 E7EUB6 86 aa9.62□□□□□ -0.87
SHMT2-209ENST00000553949 G3V318 75 aa9.62□□□□□ -0.87
SHMT2-209ENST00000553949 SULT1A3P0DMM9 295 aa9.62□□□□□ -0.87
SHMT2-209ENST00000553949 SULT1A4P0DMN0 295 aa9.62□□□□□ -0.87
SHMT2-209ENST00000553949 CRIP2P52943 208 aaPredicted RBP9.62□□□□□ -0.87
SHMT2-209ENST00000553949 TMEM267Q0VDI3 215 aaPredicted RBP9.62□□□□□ -0.87
SHMT2-209ENST00000553949 ECSCRQ19T08 205 aa9.62□□□□□ -0.87
SHMT2-209ENST00000553949 GGNBP1Q5YKI7 109 aa9.62□□□□□ -0.87
SHMT2-209ENST00000553949 CENPVQ7Z7K6 275 aaPredicted RBP9.62□□□□□ -0.87
SHMT2-209ENST00000553949 ZNF429Q86V71 674 aa9.62□□□□□ -0.87
SHMT2-209ENST00000553949 C12orf45Q8N5I9 185 aaPredicted RBP9.62□□□□□ -0.87
SHMT2-209ENST00000553949 KLHDC1Q8N7A1 406 aa9.62□□□□□ -0.87
SHMT2-209ENST00000553949 UXS1Q8NBZ7 420 aa9.62□□□□□ -0.87
SHMT2-209ENST00000553949 LFNGQ8NES3 379 aa9.62□□□□□ -0.87
SHMT2-209ENST00000553949 OR1L8Q8NGR8 309 aa9.62□□□□□ -0.87
SHMT2-209ENST00000553949 CHPT1Q8WUD6 406 aa9.62□□□□□ -0.87
SHMT2-209ENST00000553949 FYTTD1Q96QD9 318 aaKnown RBP9.62□□□□□ -0.87
SHMT2-209ENST00000553949 QTRT1Q9BXR0 403 aaKnown RBP9.62□□□□□ -0.87
SHMT2-209ENST00000553949 GON7Q9BXV9 100 aa9.62□□□□□ -0.87
SHMT2-209ENST00000553949 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.62□□□□□ -0.87
SHMT2-209ENST00000553949 CACNG5Q9UF02 275 aa9.62□□□□□ -0.87
SHMT2-209ENST00000553949 PSMB11A5LHX3 300 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 CGB1A6NKQ9 187 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 TEX22C9J3V5 150 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 ST8SIA3O43173 380 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 ADAP1O75689 374 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 IFNA21P01568 189 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 TRAPPC2P0DI81 140 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 TRAPPC2BP0DI82 140 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 APELAP0DMC3 54 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 HSPE1P61604 102 aaKnown RBP9.61□□□□□ -0.87
SHMT2-209ENST00000553949 SLC35B1P78383 322 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 CFHR3Q02985 330 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 SMCO1Q147U7 214 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 TATDN3Q17R31 274 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 AARDQ4LEZ3 155 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 AKIRIN2Q53H80 203 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 C19orf54Q5BKX5 351 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 ASPHD1Q5U4P2 390 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 UNQ5815/PRO19632Q6UWF5 114 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 ZNF329Q86UD4 541 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 OR5B3Q8NH48 314 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 WIPF2Q8TF74 440 aaPredicted RBP9.61□□□□□ -0.87
SHMT2-209ENST00000553949 TMEM68Q96MH6 324 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 MDFIQ99750 246 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 NDUFA4L2Q9NRX3 87 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 COA4Q9NYJ1 87 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 ZNF257Q9Y2Q1 563 aa9.61□□□□□ -0.87
SHMT2-209ENST00000553949 A0A1B0GU03 582 aa9.6□□□□□ -0.87
SHMT2-209ENST00000553949 C7orf66A4D0T2 115 aa9.6□□□□□ -0.87
SHMT2-209ENST00000553949 HMX3A6NHT5 357 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms