RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 C8orf17Q9NRJ1 99 aa1.42□□□□□ -2.18
VRK1-202ENST00000553683 RBFOX1Q9NWB1 397 aaKnown RBP1.42□□□□□ -2.18
VRK1-202ENST00000553683 SCN3BQ9NY72 215 aa1.42□□□□□ -2.18
VRK1-202ENST00000553683 MRPL27Q9P0M9 148 aaKnown RBP1.42□□□□□ -2.18
VRK1-202ENST00000553683 SLC23A2Q9UGH3 650 aa1.42□□□□□ -2.18
VRK1-202ENST00000553683 NAT8BQ9UHF3 227 aa1.42□□□□□ -2.18
VRK1-202ENST00000553683 TRMT112Q9UI30 125 aaKnown RBP1.42□□□□□ -2.18
VRK1-202ENST00000553683 ZNF230Q9UIE0 474 aaPredicted RBP1.42□□□□□ -2.18
VRK1-202ENST00000553683 CES1P1Q9UKY3 287 aa1.42□□□□□ -2.18
VRK1-202ENST00000553683 HS3ST2Q9Y278 367 aa1.42□□□□□ -2.18
VRK1-202ENST00000553683 KLF12Q9Y4X4 402 aa1.42□□□□□ -2.18
VRK1-202ENST00000553683 PIEZO2Q9H5I5 2752 aa1.42□□□□□ -2.18
VRK1-202ENST00000553683 SIGLEC1Q9BZZ2 1709 aa1.42□□□□□ -2.18
VRK1-202ENST00000553683 TAF1LQ8IZX4 1826 aa1.42□□□□□ -2.18
VRK1-202ENST00000553683 CEP290O15078 2479 aa1.42□□□□□ -2.18
VRK1-202ENST00000553683 FRMPD1Q5SYB0 1578 aa1.42□□□□□ -2.18
VRK1-202ENST00000553683 ZFHX2Q9C0A1 2572 aaPredicted RBP1.42□□□□□ -2.18
VRK1-202ENST00000553683 CELSR3Q9NYQ7 3312 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 TRIP11Q15643 1979 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 SSH2Q76I76 1423 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 DCHS1Q96JQ0 3298 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 NUP188Q5SRE5 1749 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 TEX15Q9BXT5 2789 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 TRAV36DV7A0A075B6V5 113 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 TRAV38-1A0A0B4J264 116 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 TMEM269A0A1B0GVZ9 245 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 C5orf63A6NC05 138 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 C1orf196B1AJZ1 125 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 CLDN25C9JDP6 229 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 F5H5K5 113 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 AIPO00170 330 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 ZNF593O00488 134 aaPredicted RBP1.41□□□□□ -2.18
VRK1-202ENST00000553683 UBFD1O14562 309 aaKnown RBP1.41□□□□□ -2.18
VRK1-202ENST00000553683 HMGB3O15347 200 aaKnown RBP1.41□□□□□ -2.18
VRK1-202ENST00000553683 CRXO43186 299 aaPredicted RBP1.41□□□□□ -2.18
VRK1-202ENST00000553683 ENSAO43768 121 aaKnown RBP1.41□□□□□ -2.18
VRK1-202ENST00000553683 CLDN11O75508 207 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 ZNF682O95780 498 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 IFNA7P01567 189 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 HLA-DQB1P01920 261 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 HBZP02008 142 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 SERPINE1P05121 402 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 OR4Q2P0C623 313 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 SULT1A3P0DMM9 295 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 SULT1A4P0DMN0 295 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 ZNF708P17019 499 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 RPL7P18124 248 aaKnown RBP1.41□□□□□ -2.18
VRK1-202ENST00000553683 ORM2P19652 201 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 PVALBP20472 110 aaPredicted RBP1.41□□□□□ -2.18
VRK1-202ENST00000553683 USF1P22415 310 aaPredicted RBP1.41□□□□□ -2.18
VRK1-202ENST00000553683 CDK2P24941 298 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 BLVRBP30043 206 aaPredicted RBP1.41□□□□□ -2.18
VRK1-202ENST00000553683 MIPP30301 263 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 PYCR1P32322 319 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 UBE2E1P51965 193 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 TAS2R30P59541 319 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 BTG2P78543 158 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 PRR3P79522 188 aaKnown RBP1.41□□□□□ -2.18
VRK1-202ENST00000553683 TNFAIP6P98066 277 aaPredicted RBP1.41□□□□□ -2.18
VRK1-202ENST00000553683 ST3GAL4Q11206 333 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 PPP1R1AQ13522 171 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 HTR4Q13639 388 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 JOSD1Q15040 202 aaPredicted RBP1.41□□□□□ -2.18
VRK1-202ENST00000553683 PAFAH1B3Q15102 231 aaKnown RBP1.41□□□□□ -2.18
VRK1-202ENST00000553683 SLC25A35Q3KQZ1 300 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 ATP6AP1LQ52LC2 224 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 CLEC12AQ5QGZ9 265 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 TMEM69Q5SWH9 247 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 C1orf195Q5TG92 126 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 TBPL2Q6SJ96 375 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 EPGNQ6UW88 154 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 FAM231DQ6ZW35 169 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 CROCCP2Q86T23 111 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 TMEM150AQ86TG1 271 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 CBLN2Q8IUK8 224 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 GAPTQ8N292 157 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 ZNF439Q8NDP4 499 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 ZNF418Q8TF45 676 aaPredicted RBP1.41□□□□□ -2.18
VRK1-202ENST00000553683 THEM6Q8WUY1 208 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 SLC7A6Q92536 515 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 ARL11Q969Q4 196 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 TMEM159Q96B96 161 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 MALSU1Q96EH3 234 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 DIRAS2Q96HU8 199 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 BTF3L4Q96K17 158 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 UBE2E2Q96LR5 201 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 IP6K3Q96PC2 410 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 PDCD1LG2Q9BQ51 273 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 LPAR5Q9H1C0 372 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 SH3BGRL3Q9H299 93 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 PRO1933Q9H354 126 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 POPDC3Q9HBV1 291 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 ENY2Q9NPA8 101 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 GPR84Q9NQS5 396 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 SAR1AQ9NR31 198 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 MRPL16Q9NX20 251 aaKnown RBP1.41□□□□□ -2.18
VRK1-202ENST00000553683 FAM206AQ9NX38 181 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 TAS2R5Q9NYW4 299 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 PRNDQ9UKY0 176 aa1.41□□□□□ -2.18
VRK1-202ENST00000553683 LAMTOR2Q9Y2Q5 125 aa1.41□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms