RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 RPL30P62888 115 aaKnown RBP12.55□□□□□ -0.4
CUX1-214ENST00000550008 EAF1Q96JC9 268 aaPredicted RBP12.55□□□□□ -0.4
CUX1-214ENST00000550008 RASL11BQ9BPW5 248 aa12.55□□□□□ -0.4
CUX1-214ENST00000550008 MLNRO43193 412 aa12.55□□□□□ -0.4
CUX1-214ENST00000550008 NPIPB3Q92617 1050 aa12.55□□□□□ -0.4
CUX1-214ENST00000550008 HIST1H2BAQ96A08 127 aa12.55□□□□□ -0.4
CUX1-214ENST00000550008 ZNF729A6NN14 1252 aaPredicted RBP12.54□□□□□ -0.4
CUX1-214ENST00000550008 TOMM20LQ6UXN7 152 aa12.54□□□□□ -0.4
CUX1-214ENST00000550008 PNKDQ8N490 385 aa12.54□□□□□ -0.4
CUX1-214ENST00000550008 ZNF525Q8N782 197 aa12.54□□□□□ -0.4
CUX1-214ENST00000550008 TCTEX1D1Q8N7M0 179 aa12.54□□□□□ -0.4
CUX1-214ENST00000550008 OR5AU1Q8NGC0 362 aa12.54□□□□□ -0.4
CUX1-214ENST00000550008 OR51M1Q9H341 326 aa12.54□□□□□ -0.4
CUX1-214ENST00000550008 ZNF586Q9NXT0 402 aa12.54□□□□□ -0.4
CUX1-214ENST00000550008 UCNP55089 124 aa12.54□□□□□ -0.4
CUX1-214ENST00000550008 VAMP3Q15836 100 aa12.54□□□□□ -0.4
CUX1-214ENST00000550008 DHRS7BQ6IAN0 325 aaPredicted RBP12.54□□□□□ -0.4
CUX1-214ENST00000550008 DIRC2Q96SL1 478 aa12.54□□□□□ -0.4
CUX1-214ENST00000550008 PARLQ9H300 379 aa12.54□□□□□ -0.4
CUX1-214ENST00000550008 WASHC3Q9Y3C0 194 aa12.54□□□□□ -0.4
CUX1-214ENST00000550008 A0A0G2JRQ6 117 aa12.54□□□□□ -0.4
CUX1-214ENST00000550008 KBTBD11-OT1A0A1B0GTJ5 212 aa12.54□□□□□ -0.4
CUX1-214ENST00000550008 C17orf100A8MU93 164 aa12.54□□□□□ -0.4
CUX1-214ENST00000550008 SEC14L6B5MCN3 397 aa12.54□□□□□ -0.4
CUX1-214ENST00000550008 OR4A47Q6IF82 309 aa12.54□□□□□ -0.4
CUX1-214ENST00000550008 OR4D5Q8NGN0 318 aa12.54□□□□□ -0.4
CUX1-214ENST00000550008 SNRNP40Q96DI7 357 aaKnown RBP12.54□□□□□ -0.4
CUX1-214ENST00000550008 AAMDCQ9H7C9 122 aa12.54□□□□□ -0.4
CUX1-214ENST00000550008 ZNF106Q9H2Y7 1883 aaKnown RBP12.54□□□□□ -0.4
CUX1-214ENST00000550008 TMSB15BA0A087X1C1 80 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 DNASE2O00115 360 aaPredicted RBP12.53□□□□□ -0.4
CUX1-214ENST00000550008 WFIKKN1Q96NZ8 548 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 VSIRQ9H7M9 311 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 IGHV3OR16-10A0A075B7F0 116 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 LINC00587B1AMM8 73 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 CSN3P07498 182 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 PCP4P48539 62 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 OR8I2Q8N0Y5 310 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 FAM122AQ96E09 287 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 CLEC5AQ9NY25 188 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 UNC80Q8N2C7 3258 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 ADAMTS9Q9P2N4 1935 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 J3KRW8 73 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 MOSP00540 346 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 CD24P25063 80 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 MS4A10Q96PG2 267 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 NPCDR1Q9BY65 106 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 IGKV1-6A0A0C4DH72 117 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.53□□□□□ -0.4
CUX1-214ENST00000550008 PDE6DO43924 150 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 S100A7P31151 101 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 GCSAMLQ5JQS6 135 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 SMIM15Q7Z3B0 74 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 GLRX5Q86SX6 157 aa12.53□□□□□ -0.4
CUX1-214ENST00000550008 MRPL20Q9BYC9 149 aaKnown RBP12.53□□□□□ -0.4
CUX1-214ENST00000550008 SAA2-SAA4A0A096LPE2 208 aa12.52□□□□□ -0.4
CUX1-214ENST00000550008 B4DEV8 164 aa12.52□□□□□ -0.4
CUX1-214ENST00000550008 F2RL2O00254 374 aa12.52□□□□□ -0.4
CUX1-214ENST00000550008 SAA2P0DJI9 122 aaPredicted RBP12.52□□□□□ -0.4
CUX1-214ENST00000550008 FXYD3Q14802 87 aa12.52□□□□□ -0.4
CUX1-214ENST00000550008 MORN2Q502X0 79 aa12.52□□□□□ -0.4
CUX1-214ENST00000550008 RNASEKQ6P5S7 137 aaKnown RBP12.52□□□□□ -0.4
CUX1-214ENST00000550008 PAXXQ9BUH6 204 aa12.52□□□□□ -0.4
CUX1-214ENST00000550008 PLSCR4Q9NRQ2 329 aa12.52□□□□□ -0.4
CUX1-214ENST00000550008 LRRC75BQ2VPJ9 315 aa12.52□□□□□ -0.41
CUX1-214ENST00000550008 DPPA3Q6W0C5 159 aa12.52□□□□□ -0.41
CUX1-214ENST00000550008 STPG3Q8N7X2 389 aa12.52□□□□□ -0.41
CUX1-214ENST00000550008 OR9G1Q8NH87 305 aa12.52□□□□□ -0.41
CUX1-214ENST00000550008 SNURFLB1AK76 121 aa12.52□□□□□ -0.41
CUX1-214ENST00000550008 WT1P19544 449 aaPredicted RBP12.52□□□□□ -0.41
CUX1-214ENST00000550008 CRYBB3P26998 211 aa12.52□□□□□ -0.41
CUX1-214ENST00000550008 ERVFRD-1P60508 538 aa12.52□□□□□ -0.41
CUX1-214ENST00000550008 RPEL1Q2QD12 228 aa12.52□□□□□ -0.41
CUX1-214ENST00000550008 Q6ZRM9 215 aa12.52□□□□□ -0.41
CUX1-214ENST00000550008 FAM90A1Q86YD7 464 aa12.52□□□□□ -0.41
CUX1-214ENST00000550008 ZNF596Q8TC21 504 aa12.52□□□□□ -0.41
CUX1-214ENST00000550008 IGKV1-5P01602 117 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 IGHV1-46P01743 117 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 PRB4P10163 310 aaPredicted RBP12.51□□□□□ -0.41
CUX1-214ENST00000550008 CRISP2P16562 243 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 AMTP48728 403 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 ZNF474Q6S9Z5 364 aaPredicted RBP12.51□□□□□ -0.41
CUX1-214ENST00000550008 OR4C13Q8NGP0 309 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 TMEM171Q8WVE6 324 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 SMDT1Q9H4I9 107 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 THYN1Q9P016 225 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 M0R143 59 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 FGF16O43320 207 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 ZNF253O75346 499 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 IGFBP2P18065 325 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 LY6DQ14210 128 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 ZNF146Q15072 292 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 CD177Q8N6Q3 437 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 OR51G1Q8NGK1 321 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 NABP2Q9BQ15 211 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 SLX1AQ9BQ83 275 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 REG4Q9BYZ8 158 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 GPR61Q9BZJ8 451 aa12.51□□□□□ -0.41
CUX1-214ENST00000550008 SRP19P09132 144 aaKnown RBP12.51□□□□□ -0.41
CUX1-214ENST00000550008 ZNF137PP52743 207 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms