RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 COQ8AQ8NI60 647 aa16.69■□□□□ 0.26
VPS29-206ENST00000549578 ZNF431Q8TF32 576 aaPredicted RBP16.69■□□□□ 0.26
VPS29-206ENST00000549578 SRSF12Q8WXF0 261 aaKnown RBP16.69■□□□□ 0.26
VPS29-206ENST00000549578 WSB1Q9Y6I7 421 aa16.69■□□□□ 0.26
VPS29-206ENST00000549578 E7EUB6 86 aa16.68■□□□□ 0.26
VPS29-206ENST00000549578 HAX1O00165 279 aa16.68■□□□□ 0.26
VPS29-206ENST00000549578 IGF1P05019 195 aa16.68■□□□□ 0.26
VPS29-206ENST00000549578 IL5P05113 134 aa16.68■□□□□ 0.26
VPS29-206ENST00000549578 VDAC1P21796 283 aa16.68■□□□□ 0.26
VPS29-206ENST00000549578 MAS1LP35410 378 aa16.68■□□□□ 0.26
VPS29-206ENST00000549578 AWAT1Q58HT5 328 aa16.68■□□□□ 0.26
VPS29-206ENST00000549578 Q6ZRM9 215 aa16.68■□□□□ 0.26
VPS29-206ENST00000549578 STPG2Q8N412 459 aa16.68■□□□□ 0.26
VPS29-206ENST00000549578 OR4A16Q8NH70 328 aa16.68■□□□□ 0.26
VPS29-206ENST00000549578 MITD1Q8WV92 249 aa16.68■□□□□ 0.26
VPS29-206ENST00000549578 GPR146Q96CH1 333 aa16.68■□□□□ 0.26
VPS29-206ENST00000549578 COL6A5A8TX70 2615 aa16.67■□□□□ 0.26
VPS29-206ENST00000549578 A0A0B4J293 547 aa16.67■□□□□ 0.26
VPS29-206ENST00000549578 C15orf61A6NNL5 157 aa16.67■□□□□ 0.26
VPS29-206ENST00000549578 G3V318 75 aa16.67■□□□□ 0.26
VPS29-206ENST00000549578 RBMXL2O75526 392 aaKnown RBP16.67■□□□□ 0.26
VPS29-206ENST00000549578 HOXB5P09067 269 aa16.67■□□□□ 0.26
VPS29-206ENST00000549578 APELAP0DMC3 54 aa16.67■□□□□ 0.26
VPS29-206ENST00000549578 RPL27AP46776 148 aaKnown RBP16.67■□□□□ 0.26
VPS29-206ENST00000549578 PROK1P58294 105 aa16.67■□□□□ 0.26
VPS29-206ENST00000549578 ECSCRQ19T08 205 aa16.67■□□□□ 0.26
VPS29-206ENST00000549578 NMSQ5H8A3 153 aa16.67■□□□□ 0.26
VPS29-206ENST00000549578 FAM219AQ8IW50 185 aa16.67■□□□□ 0.26
VPS29-206ENST00000549578 KLHDC1Q8N7A1 406 aa16.67■□□□□ 0.26
VPS29-206ENST00000549578 SGMS2Q8NHU3 365 aa16.67■□□□□ 0.26
VPS29-206ENST00000549578 LSM10Q969L4 123 aaKnown RBP16.67■□□□□ 0.26
VPS29-206ENST00000549578 COMMD5Q9GZQ3 224 aa16.67■□□□□ 0.26
VPS29-206ENST00000549578 WNT10AQ9GZT5 417 aa16.67■□□□□ 0.26
VPS29-206ENST00000549578 PRNDQ9UKY0 176 aa16.67■□□□□ 0.26
VPS29-206ENST00000549578 A0A1B0GUS0 222 aa16.66■□□□□ 0.26
VPS29-206ENST00000549578 A0A1B0GW64 132 aa16.66■□□□□ 0.26
VPS29-206ENST00000549578 DUXBA0A1W2PPF3 345 aa16.66■□□□□ 0.26
VPS29-206ENST00000549578 MSGN1A6NI15 193 aa16.66■□□□□ 0.26
VPS29-206ENST00000549578 DHFRP00374 187 aa16.66■□□□□ 0.26
VPS29-206ENST00000549578 C10orf99Q6UWK7 81 aa16.66■□□□□ 0.26
VPS29-206ENST00000549578 LFNGQ8NES3 379 aa16.66■□□□□ 0.26
VPS29-206ENST00000549578 FYTTD1Q96QD9 318 aaKnown RBP16.66■□□□□ 0.26
VPS29-206ENST00000549578 PHB2Q99623 299 aa16.66■□□□□ 0.26
VPS29-206ENST00000549578 TMEM14BQ9NUH8 114 aa16.66■□□□□ 0.26
VPS29-206ENST00000549578 CACNG5Q9UF02 275 aa16.66■□□□□ 0.26
VPS29-206ENST00000549578 OR51B2Q9Y5P1 312 aa16.66■□□□□ 0.26
VPS29-206ENST00000549578 TET2Q6N021 2002 aaPredicted RBP16.66■□□□□ 0.26
VPS29-206ENST00000549578 TRAV41A0A0B4J266 112 aa16.65■□□□□ 0.26
VPS29-206ENST00000549578 PIGBOS1A0A0B4J2F0 54 aa16.65■□□□□ 0.26
VPS29-206ENST00000549578 CGB1A6NKQ9 187 aa16.65■□□□□ 0.26
VPS29-206ENST00000549578 PRAF2O60831 178 aa16.65■□□□□ 0.26
VPS29-206ENST00000549578 ADAP1O75689 374 aa16.65■□□□□ 0.26
VPS29-206ENST00000549578 FGF2P09038 288 aa16.65■□□□□ 0.26
VPS29-206ENST00000549578 ZNF329Q86UD4 541 aa16.65■□□□□ 0.26
VPS29-206ENST00000549578 UXS1Q8NBZ7 420 aa16.65■□□□□ 0.26
VPS29-206ENST00000549578 MDFIQ99750 246 aa16.65■□□□□ 0.26
VPS29-206ENST00000549578 QTRT1Q9BXR0 403 aaKnown RBP16.65■□□□□ 0.26
VPS29-206ENST00000549578 FOXA2Q9Y261 457 aaPredicted RBP16.65■□□□□ 0.26
VPS29-206ENST00000549578 TEX50A0A1B0GTY4 177 aa16.65■□□□□ 0.26
VPS29-206ENST00000549578 CRIP2P52943 208 aaPredicted RBP16.65■□□□□ 0.26
VPS29-206ENST00000549578 OXA1LQ15070 435 aa16.65■□□□□ 0.26
VPS29-206ENST00000549578 GGNBP1Q5YKI7 109 aa16.65■□□□□ 0.26
VPS29-206ENST00000549578 UNQ5815/PRO19632Q6UWF5 114 aa16.65■□□□□ 0.26
VPS29-206ENST00000549578 CENPVQ7Z7K6 275 aaPredicted RBP16.65■□□□□ 0.26
VPS29-206ENST00000549578 CHPT1Q8WUD6 406 aa16.65■□□□□ 0.26
VPS29-206ENST00000549578 GPN1Q9HCN4 374 aaPredicted RBP16.65■□□□□ 0.26
VPS29-206ENST00000549578 ZNF580Q9UK33 172 aa16.65■□□□□ 0.26
VPS29-206ENST00000549578 PSMB11A5LHX3 300 aa16.64■□□□□ 0.25
VPS29-206ENST00000549578 HMX3A6NHT5 357 aa16.64■□□□□ 0.25
VPS29-206ENST00000549578 TEX22C9J3V5 150 aa16.64■□□□□ 0.25
VPS29-206ENST00000549578 C19orf54Q5BKX5 351 aa16.64■□□□□ 0.25
VPS29-206ENST00000549578 ASPHD1Q5U4P2 390 aa16.64■□□□□ 0.25
VPS29-206ENST00000549578 C12orf45Q8N5I9 185 aaPredicted RBP16.64■□□□□ 0.25
VPS29-206ENST00000549578 SPIN2AQ99865 258 aa16.64■□□□□ 0.25
VPS29-206ENST00000549578 SPIN2BQ9BPZ2 258 aa16.64■□□□□ 0.25
VPS29-206ENST00000549578 HINT2Q9BX68 163 aa16.64■□□□□ 0.25
VPS29-206ENST00000549578 FKBP11Q9NYL4 201 aa16.64■□□□□ 0.25
VPS29-206ENST00000549578 TMED3Q9Y3Q3 217 aa16.64■□□□□ 0.25
VPS29-206ENST00000549578 TENM1Q9UKZ4 2725 aa16.64■□□□□ 0.25
VPS29-206ENST00000549578 ST8SIA3O43173 380 aa16.63■□□□□ 0.25
VPS29-206ENST00000549578 SULT1A3P0DMM9 295 aa16.63■□□□□ 0.25
VPS29-206ENST00000549578 SULT1A4P0DMN0 295 aa16.63■□□□□ 0.25
VPS29-206ENST00000549578 TMEM267Q0VDI3 215 aaPredicted RBP16.63■□□□□ 0.25
VPS29-206ENST00000549578 TATDN3Q17R31 274 aa16.63■□□□□ 0.25
VPS29-206ENST00000549578 OR1L8Q8NGR8 309 aa16.63■□□□□ 0.25
VPS29-206ENST00000549578 MPTX1A8MV57 137 aa16.62■□□□□ 0.25
VPS29-206ENST00000549578 SNRPGP15A8MWD9 76 aa16.62■□□□□ 0.25
VPS29-206ENST00000549578 CFHR3Q02985 330 aa16.62■□□□□ 0.25
VPS29-206ENST00000549578 SMCO1Q147U7 214 aa16.62■□□□□ 0.25
VPS29-206ENST00000549578 AKIRIN2Q53H80 203 aa16.62■□□□□ 0.25
VPS29-206ENST00000549578 ZNF429Q86V71 674 aa16.62■□□□□ 0.25
VPS29-206ENST00000549578 OR5B3Q8NH48 314 aa16.62■□□□□ 0.25
VPS29-206ENST00000549578 WIPF2Q8TF74 440 aaPredicted RBP16.62■□□□□ 0.25
VPS29-206ENST00000549578 CTNNBIP1Q9NSA3 81 aaPredicted RBP16.62■□□□□ 0.25
VPS29-206ENST00000549578 A0A1W2PN81 502 aa16.61■□□□□ 0.25
VPS29-206ENST00000549578 NXPH3O95157 252 aa16.61■□□□□ 0.25
VPS29-206ENST00000549578 TRAPPC2P0DI81 140 aa16.61■□□□□ 0.25
VPS29-206ENST00000549578 TRAPPC2BP0DI82 140 aa16.61■□□□□ 0.25
VPS29-206ENST00000549578 PPIFP30405 207 aaKnown RBP16.61■□□□□ 0.25
VPS29-206ENST00000549578 CHRNA7P36544 502 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms