RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 NSL1Q96IY1 281 aa4.7□□□□□ -1.66
LIMA1-204ENST00000549064 SCRT1Q9BWW7 348 aa4.7□□□□□ -1.66
LIMA1-204ENST00000549064 FAM212BQ9NTI7 297 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-204ENST00000549064 JPT1Q9UK76 154 aa4.7□□□□□ -1.66
LIMA1-204ENST00000549064 VPS13BQ7Z7G8 4022 aa4.7□□□□□ -1.66
LIMA1-204ENST00000549064 NACAE9PAV3 2078 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 OR4C45A6NMZ5 311 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 C11orf94C9JXX5 98 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 LGALS9O00182 355 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 YPEL1O60688 119 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 RBBP9O75884 186 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 CST1P01037 141 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 IGHV3-23P01764 117 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 HLA-DMBP28068 263 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 PRDX6P30041 224 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 ATP5G2Q06055 141 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 GK3PQ14409 553 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 PTGES3Q15185 160 aaKnown RBP4.69□□□□□ -1.66
LIMA1-204ENST00000549064 NHLRC3Q5JS37 347 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 DMKNQ6E0U4 476 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-204ENST00000549064 Q6ZTC4 211 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 YPEL2Q96QA6 119 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 IL4I1Q96RQ9 567 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 TSNAXQ99598 290 aaKnown RBP4.69□□□□□ -1.66
LIMA1-204ENST00000549064 PHB2Q99623 299 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 ZNF556Q9HAH1 456 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 SLC35D1Q9NTN3 355 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 ENOPH1Q9UHY7 261 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 S4R3C0 116 aa4.69□□□□□ -1.66
LIMA1-204ENST00000549064 FLG2Q5D862 2391 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-204ENST00000549064 SRRM2Q9UQ35 2752 aaKnown RBP4.68□□□□□ -1.66
LIMA1-204ENST00000549064 EPM2AB3EWF7 344 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 MCRIP1C9JLW8 97 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 SSX5O60225 188 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 CCDC22O60826 627 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 GGCTO75223 188 aaKnown RBP4.68□□□□□ -1.66
LIMA1-204ENST00000549064 OR2J3O76001 311 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 IGLV2-23P01705 113 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 HTR1AP08908 422 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 OR9G9P0C7N8 305 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 RBMY1CP0DJD4 496 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 P0DMU3 169 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 FAM231AP0DMU4 169 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 FAM231CP0DMU5 169 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 MRGPRG-AS1Q2M3A8 158 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 MPV17LQ2QL34 196 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 C1orf134Q5TEV5 83 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 FAM71F2Q6NXP2 309 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 LINC00596Q86U02 117 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 APRG1Q8IVJ8 170 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 SLC38A6Q8IZM9 456 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 GAPTQ8N292 157 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 ZNF383Q8NA42 475 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 OR5D14Q8NGL3 314 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 OR4A5Q8NH83 315 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 CD300LFQ8TDQ1 290 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 GALNT14Q96FL9 552 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 SPAG8Q99932 426 aaPredicted RBP4.68□□□□□ -1.66
LIMA1-204ENST00000549064 RNF5Q99942 180 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 CHRDL1Q9BU40 450 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 KRTAP4-8Q9BYQ9 185 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 METTL9Q9H1A3 318 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 PIPOXQ9P0Z9 390 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 FAT1Q14517 4588 aa4.68□□□□□ -1.66
LIMA1-204ENST00000549064 IGLV5-45A0A087WSX0 123 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 TRBV9A0A0B4J1U6 114 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 TRAV10A0A0B4J240 114 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 TRAV25A0A0B4J276 109 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 A0A0U1RRA0 63 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 FAM223BA6NKX1 122 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 MPTX1A8MV57 137 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 A8MWP6 167 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 GNGT2O14610 69 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 RAB29O14966 203 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 CRYGBP07316 175 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 T-ENOLP0DO92 83 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 RAB3AP20336 220 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 TWIST1Q15672 202 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 C15orf32Q32M92 178 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 SLC22A6Q4U2R8 563 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 ZNF585BQ52M93 769 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 SOHLH1Q5JUK2 328 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 CD164L2Q6UWJ8 174 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 UNQ9165/PRO28630Q6UXU0 137 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 C19orf35Q6ZS72 473 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 ZNF767PQ75MW2 155 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 NR2C2APQ86WQ0 139 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 GPHB5Q86YW7 130 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 GID4Q8IVV7 300 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 FAM223AQ8IWN6 122 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 SLC24A4Q8NFF2 622 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 OR56B1Q8NGI3 324 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 MRPL30Q8TCC3 161 aaKnown RBP4.67□□□□□ -1.66
LIMA1-204ENST00000549064 IL1F10Q8WWZ1 152 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 CMTM5Q96DZ9 223 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 PELI1Q96FA3 418 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 RNF126Q9BV68 326 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 TAS2R4Q9NYW5 299 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 IL36GQ9NZH8 169 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 KCNIP1Q9NZI2 227 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms