RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ZNF705FA8MVS1 300 aaPredicted RBP1.6□□□□□ -2.15
VPS29-205ENST00000548539 IFNA16P05015 189 aa1.6□□□□□ -2.15
VPS29-205ENST00000548539 SRP19P09132 144 aaKnown RBP1.6□□□□□ -2.15
VPS29-205ENST00000548539 HLA-DMBP28068 263 aa1.6□□□□□ -2.15
VPS29-205ENST00000548539 IDH3GP51553 393 aaPredicted RBP1.6□□□□□ -2.15
VPS29-205ENST00000548539 POLR2GP62487 172 aaKnown RBP eCLIP1.6□□□□□ -2.15
VPS29-205ENST00000548539 CAV1Q03135 178 aa1.6□□□□□ -2.15
VPS29-205ENST00000548539 GLO1Q04760 184 aa1.6□□□□□ -2.15
VPS29-205ENST00000548539 OR2F1Q13607 317 aa1.6□□□□□ -2.15
VPS29-205ENST00000548539 GUK1Q16774 197 aa1.6□□□□□ -2.15
VPS29-205ENST00000548539 DCXRQ7Z4W1 244 aa1.6□□□□□ -2.15
VPS29-205ENST00000548539 KTN1-AS1Q86SY8 53 aa1.6□□□□□ -2.15
VPS29-205ENST00000548539 ZNF676Q8N7Q3 588 aa1.6□□□□□ -2.15
VPS29-205ENST00000548539 OR8B12Q8NGG6 310 aa1.6□□□□□ -2.15
VPS29-205ENST00000548539 ANKRD7Q92527 254 aa1.6□□□□□ -2.15
VPS29-205ENST00000548539 ROPN1LQ96C74 230 aa1.6□□□□□ -2.15
VPS29-205ENST00000548539 PPP1R14BQ96C90 147 aa1.6□□□□□ -2.15
VPS29-205ENST00000548539 OR8D2Q9GZM6 311 aa1.6□□□□□ -2.15
VPS29-205ENST00000548539 PKIGQ9Y2B9 76 aa1.6□□□□□ -2.15
VPS29-205ENST00000548539 ATG2BQ96BY7 2078 aa1.6□□□□□ -2.15
VPS29-205ENST00000548539 TRAV7A0A075B6U4 112 aa1.59□□□□□ -2.15
VPS29-205ENST00000548539 A0A0J9YY10 115 aa1.59□□□□□ -2.15
VPS29-205ENST00000548539 A0A1B0GV50 99 aa1.59□□□□□ -2.15
VPS29-205ENST00000548539 A0A1B0GX78 115 aa1.59□□□□□ -2.15
VPS29-205ENST00000548539 H7C2G1 150 aa1.59□□□□□ -2.15
VPS29-205ENST00000548539 KRT75O95678 551 aa1.59□□□□□ -2.15
VPS29-205ENST00000548539 MSNP26038 577 aaKnown RBP1.59□□□□□ -2.15
VPS29-205ENST00000548539 PSMB8P28062 276 aa1.59□□□□□ -2.15
VPS29-205ENST00000548539 ALDH3A1P30838 453 aa1.59□□□□□ -2.15
VPS29-205ENST00000548539 IFITM2Q01629 132 aa1.59□□□□□ -2.15
VPS29-205ENST00000548539 GRK1Q15835 563 aa1.59□□□□□ -2.15
VPS29-205ENST00000548539 HIST3H3Q16695 136 aa1.59□□□□□ -2.15
VPS29-205ENST00000548539 TMEM155Q4W5P6 130 aa1.59□□□□□ -2.15
VPS29-205ENST00000548539 GLT8D1Q68CQ7 371 aa1.59□□□□□ -2.15
VPS29-205ENST00000548539 IMP4Q96G21 291 aaKnown RBP1.59□□□□□ -2.15
VPS29-205ENST00000548539 PPP1R2P1Q96PQ5 205 aa1.59□□□□□ -2.15
VPS29-205ENST00000548539 CISHQ9NSE2 258 aa1.59□□□□□ -2.15
VPS29-205ENST00000548539 FUT9Q9Y231 359 aa1.59□□□□□ -2.15
VPS29-205ENST00000548539 MYO3BQ8WXR4 1341 aa1.59□□□□□ -2.16
VPS29-205ENST00000548539 FCGBPQ9Y6R7 5405 aaPredicted RBP1.58□□□□□ -2.16
VPS29-205ENST00000548539 DICER1Q9UPY3 1922 aaKnown RBP1.58□□□□□ -2.16
VPS29-205ENST00000548539 SNAPC4Q5SXM2 1469 aa1.58□□□□□ -2.16
VPS29-205ENST00000548539 WDR90Q96KV7 1748 aa1.58□□□□□ -2.16
VPS29-205ENST00000548539 TRBV20OR9-2A0A075B6H5 130 aa1.58□□□□□ -2.16
VPS29-205ENST00000548539 IGHV1-18A0A0C4DH31 117 aa1.58□□□□□ -2.16
VPS29-205ENST00000548539 OR5G3P0C626 314 aa1.58□□□□□ -2.16
VPS29-205ENST00000548539 SULT1A1P50225 295 aa1.58□□□□□ -2.16
VPS29-205ENST00000548539 AQP4P55087 323 aa1.58□□□□□ -2.16
VPS29-205ENST00000548539 DEFA1P59665 94 aa1.58□□□□□ -2.16
VPS29-205ENST00000548539 C9orf64Q5T6V5 341 aa1.58□□□□□ -2.16
VPS29-205ENST00000548539 TRAPPC5Q8IUR0 188 aa1.58□□□□□ -2.16
VPS29-205ENST00000548539 SLC7A6Q92536 515 aa1.58□□□□□ -2.16
VPS29-205ENST00000548539 DOHHQ9BU89 302 aa1.58□□□□□ -2.16
VPS29-205ENST00000548539 EFCAB1Q9HAE3 211 aa1.58□□□□□ -2.16
VPS29-205ENST00000548539 XAGE1AQ9HD64 81 aa1.58□□□□□ -2.16
VPS29-205ENST00000548539 DCCP43146 1447 aa1.57□□□□□ -2.16
VPS29-205ENST00000548539 ARHGAP32A7KAX9 2087 aa1.57□□□□□ -2.16
VPS29-205ENST00000548539 SIPA1L1O43166 1804 aa1.57□□□□□ -2.16
VPS29-205ENST00000548539 ITGB4P16144 1822 aa1.57□□□□□ -2.16
VPS29-205ENST00000548539 A0A0D9SEW6 157 aa1.57□□□□□ -2.16
VPS29-205ENST00000548539 HMSDA8MTL9 139 aa1.57□□□□□ -2.16
VPS29-205ENST00000548539 GPX1P07203 203 aa1.57□□□□□ -2.16
VPS29-205ENST00000548539 CEBPGP53567 150 aa1.57□□□□□ -2.16
VPS29-205ENST00000548539 RELAQ04206 551 aa1.57□□□□□ -2.16
VPS29-205ENST00000548539 SLC36A1Q7Z2H8 476 aa1.57□□□□□ -2.16
VPS29-205ENST00000548539 IL36BQ9NZH7 164 aa1.57□□□□□ -2.16
VPS29-205ENST00000548539 VPS29Q9UBQ0 182 aa1.57□□□□□ -2.16
VPS29-205ENST00000548539 RSL24D1Q9UHA3 163 aaKnown RBP1.57□□□□□ -2.16
VPS29-205ENST00000548539 FLT4P35916 1363 aa1.57□□□□□ -2.16
VPS29-205ENST00000548539 COL5A3P25940 1745 aaPredicted RBP1.57□□□□□ -2.16
VPS29-205ENST00000548539 MYO9BQ13459 2157 aa1.57□□□□□ -2.16
VPS29-205ENST00000548539 NYNRINQ9P2P1 1898 aaKnown RBP1.56□□□□□ -2.16
VPS29-205ENST00000548539 SIGLEC16A6NMB1 481 aa1.56□□□□□ -2.16
VPS29-205ENST00000548539 PSMD12O00232 456 aaPredicted RBP1.56□□□□□ -2.16
VPS29-205ENST00000548539 CHP2O43745 196 aa1.56□□□□□ -2.16
VPS29-205ENST00000548539 ZNF737O75373 536 aa1.56□□□□□ -2.16
VPS29-205ENST00000548539 RPP14O95059 124 aaKnown RBP1.56□□□□□ -2.16
VPS29-205ENST00000548539 C1QCP02747 245 aa1.56□□□□□ -2.16
VPS29-205ENST00000548539 SULT1A3P0DMM9 295 aa1.56□□□□□ -2.16
VPS29-205ENST00000548539 SULT1A4P0DMN0 295 aa1.56□□□□□ -2.16
VPS29-205ENST00000548539 CD79AP11912 226 aa1.56□□□□□ -2.16
VPS29-205ENST00000548539 EVX1P49640 407 aa1.56□□□□□ -2.16
VPS29-205ENST00000548539 EMP1P54849 157 aa1.56□□□□□ -2.16
VPS29-205ENST00000548539 AESQ08117 197 aa1.56□□□□□ -2.16
VPS29-205ENST00000548539 KCNJ8Q15842 424 aa1.56□□□□□ -2.16
VPS29-205ENST00000548539 Q6ZRN7 208 aaPredicted RBP1.56□□□□□ -2.16
VPS29-205ENST00000548539 C1orf158Q8N1D5 194 aa1.56□□□□□ -2.16
VPS29-205ENST00000548539 RPP25LQ8N5L8 163 aaKnown RBP1.56□□□□□ -2.16
VPS29-205ENST00000548539 WDR61Q9GZS3 305 aaKnown RBP1.56□□□□□ -2.16
VPS29-205ENST00000548539 STRCP1A6NGW2 1772 aa1.56□□□□□ -2.16
VPS29-205ENST00000548539 RGS12O14924 1447 aa1.56□□□□□ -2.16
VPS29-205ENST00000548539 PLXNA3P51805 1871 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 CLDN24A6NM45 220 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 TRAPPC2LH3BP13 241 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 ORC5O43913 435 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 E2F6O75461 281 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 IGHV3-7P01780 117 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 PRM2P04554 102 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 MSMBP08118 114 aa1.55□□□□□ -2.16
VPS29-205ENST00000548539 SERPINA6P08185 405 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms