RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 UPK2O00526 184 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 EGR4Q05215 589 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 LINC01590Q5TEZ4 76 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 MRPL54Q6P161 138 aaKnown RBP6.63□□□□□ -1.35
VPS13D-211ENST00000543710 MS4A3Q96HJ5 214 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 GNB1LQ9BYB4 327 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 A0A1W2PR80 420 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 TMEM11P17152 192 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 LY6EQ16553 131 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 RFLNBQ8N5W9 214 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 CLDND2Q8NHS1 167 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 RNF166Q96A37 237 aaPredicted RBP6.63□□□□□ -1.35
VPS13D-211ENST00000543710 WNT5BQ9H1J7 359 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 TRBV6-6A0A0A6YYG2 114 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 M0R3E3 92 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 RCC1P18754 421 aaPredicted RBP6.63□□□□□ -1.35
VPS13D-211ENST00000543710 CKS2P33552 79 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 CAMPP49913 170 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 ADIPOQQ15848 244 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 Q6ZS49 121 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 PUSL1Q8N0Z8 303 aaKnown RBP6.63□□□□□ -1.35
VPS13D-211ENST00000543710 VN1R17PQ8TDU5 208 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 DDB2Q92466 427 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 RCC1LQ96I51 464 aaKnown RBP6.63□□□□□ -1.35
VPS13D-211ENST00000543710 NPCDR1Q9BY65 106 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 RPP21Q9H633 154 aaKnown RBP6.63□□□□□ -1.35
VPS13D-211ENST00000543710 DOCK5Q9H7D0 1870 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 RNF222A6NCQ9 220 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 NPFFO15130 113 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 PPBPP02775 128 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 IGKV3-11P04433 115 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 LYL1P12980 280 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 FHITP49789 147 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 OR8I2Q8N0Y5 310 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 FGFRL1Q8N441 504 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 OR8A1Q8NGG7 326 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 C16orf92Q96LL3 132 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 A6NNC1 897 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 IL4P05112 153 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 ARL14EPLP0DKL9 152 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 DEFB113Q30KQ7 82 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 PLA2G2CQ5R387 149 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 ACP7Q6ZNF0 438 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 C11orf42Q8N5U0 333 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 HSPB9Q9BQS6 159 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 IFI27L2Q9H2X8 130 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 OSTCQ9NRP0 149 aa6.63□□□□□ -1.35
VPS13D-211ENST00000543710 EP300Q09472 2414 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-211ENST00000543710 IGKV3D-11A0A0A0MRZ8 115 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 FAM157AC9JC47 383 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 UBE2CO00762 179 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 SNRPD3P62318 126 aaKnown RBP6.62□□□□□ -1.35
VPS13D-211ENST00000543710 RPL31P62899 125 aaKnown RBP6.62□□□□□ -1.35
VPS13D-211ENST00000543710 CX3CL1P78423 397 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 HIST1H1AQ02539 215 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-211ENST00000543710 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 TMEM101Q96IK0 257 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 DKK4Q9UBT3 224 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 PDCD11Q14690 1871 aaKnown RBP6.62□□□□□ -1.35
VPS13D-211ENST00000543710 YPEL1O60688 119 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 EIF3GO75821 320 aaKnown RBP eCLIP6.62□□□□□ -1.35
VPS13D-211ENST00000543710 PRB1P04280 392 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 HOXA5P20719 270 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 Q71RC1 249 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-211ENST00000543710 BATF2Q8N1L9 274 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 YPEL2Q96QA6 119 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 SSBP3Q9BWW4 388 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-211ENST00000543710 KLK5Q9Y337 293 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-211ENST00000543710 MOB4Q9Y3A3 225 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 A0A087WV48 116 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 C7orf71A4D174 169 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 IL6RP08887 468 aaPredicted RBP6.62□□□□□ -1.35
VPS13D-211ENST00000543710 CDKN1AP38936 164 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 PLP1P60201 277 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 IFITM2Q01629 132 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 AESQ08117 197 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 MIEN1Q9BRT3 115 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 AICDAQ9GZX7 198 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 HS3ST3B1Q9Y662 390 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 LINC00312Q9Y6C7 94 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 DICER1Q9UPY3 1922 aaKnown RBP6.62□□□□□ -1.35
VPS13D-211ENST00000543710 TMEM262E9PQX1 116 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 SSMEM1Q8WWF3 244 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 DYRK2Q92630 601 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 KIR2DL4Q99706 377 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 SDF2L1Q9HCN8 221 aa6.62□□□□□ -1.35
VPS13D-211ENST00000543710 A0A0J9YW62 118 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 MARCH11A6NNE9 402 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 RNF223E7ERA6 249 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 SRP19P09132 144 aaKnown RBP6.61□□□□□ -1.35
VPS13D-211ENST00000543710 Q6ZT83 130 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 CNTRLQ7Z7A1 2325 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 RBMY1BA6NDE4 496 aaKnown RBP6.61□□□□□ -1.35
VPS13D-211ENST00000543710 RBMY1EA6NEQ0 496 aaKnown RBP6.61□□□□□ -1.35
VPS13D-211ENST00000543710 NDUFB4O95168 129 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 RBMY1DP0C7P1 496 aaKnown RBP6.61□□□□□ -1.35
VPS13D-211ENST00000543710 RBMY1A1P0DJD3 496 aaKnown RBP6.61□□□□□ -1.35
VPS13D-211ENST00000543710 RBMY1CP0DJD4 496 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 MEGF10Q96KG7 1140 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 DUX5Q96PT3 197 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms