RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 NDPQ00604 133 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 STPG2Q8N412 459 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 OR52B4Q8NGK2 314 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 OR4A16Q8NH70 328 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 CHPT1Q8WUD6 406 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 NOL4LQ96MY1 436 aaPredicted RBP13.49□□□□□ -0.25
LIG1-204ENST00000542460 GON7Q9BXV9 100 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 COMMD5Q9GZQ3 224 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 WNT10AQ9GZT5 417 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 FKBP11Q9NYL4 201 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 PRNDQ9UKY0 176 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 hCG_2014768A0A024R1R8 64 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 TMEM267Q0VDI3 215 aaPredicted RBP13.49□□□□□ -0.25
LIG1-204ENST00000542460 AWAT1Q58HT5 328 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 SGMS2Q8NHU3 365 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 GRPEL2Q8TAA5 225 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 ZNF431Q8TF32 576 aaPredicted RBP13.49□□□□□ -0.25
LIG1-204ENST00000542460 MITD1Q8WV92 249 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 SRSF12Q8WXF0 261 aaKnown RBP13.49□□□□□ -0.25
LIG1-204ENST00000542460 PHB2Q99623 299 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 SEC22CQ9BRL7 303 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 LINC00527Q9UJ94 153 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 NSG2Q9Y328 171 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 FBXO7Q9Y3I1 522 aa13.49□□□□□ -0.25
LIG1-204ENST00000542460 A0A0B4J293 547 aa13.48□□□□□ -0.25
LIG1-204ENST00000542460 A0A0G2JRQ6 117 aa13.48□□□□□ -0.25
LIG1-204ENST00000542460 MSGN1A6NI15 193 aa13.48□□□□□ -0.25
LIG1-204ENST00000542460 C15orf61A6NNL5 157 aa13.48□□□□□ -0.25
LIG1-204ENST00000542460 RBMXL2O75526 392 aaKnown RBP13.48□□□□□ -0.25
LIG1-204ENST00000542460 EGR2P11161 476 aaPredicted RBP13.48□□□□□ -0.25
LIG1-204ENST00000542460 CRIP2P52943 208 aaPredicted RBP13.48□□□□□ -0.25
LIG1-204ENST00000542460 PROK1P58294 105 aa13.48□□□□□ -0.25
LIG1-204ENST00000542460 IZUMO4Q1ZYL8 232 aa13.48□□□□□ -0.25
LIG1-204ENST00000542460 CENPVQ7Z7K6 275 aaPredicted RBP13.48□□□□□ -0.25
LIG1-204ENST00000542460 GPR146Q96CH1 333 aa13.48□□□□□ -0.25
LIG1-204ENST00000542460 SPIN2AQ99865 258 aa13.48□□□□□ -0.25
LIG1-204ENST00000542460 SPIN2BQ9BPZ2 258 aa13.48□□□□□ -0.25
LIG1-204ENST00000542460 FAM103A1Q9BTL3 118 aaKnown RBP13.48□□□□□ -0.25
LIG1-204ENST00000542460 GPN1Q9HCN4 374 aaPredicted RBP13.48□□□□□ -0.25
LIG1-204ENST00000542460 TMEM14BQ9NUH8 114 aa13.48□□□□□ -0.25
LIG1-204ENST00000542460 FOXA2Q9Y261 457 aaPredicted RBP13.48□□□□□ -0.25
LIG1-204ENST00000542460 TMED3Q9Y3Q3 217 aa13.48□□□□□ -0.25
LIG1-204ENST00000542460 TRAV41A0A0B4J266 112 aa13.47□□□□□ -0.25
LIG1-204ENST00000542460 HAX1O00165 279 aa13.47□□□□□ -0.25
LIG1-204ENST00000542460 RPL27AP46776 148 aaKnown RBP13.47□□□□□ -0.25
LIG1-204ENST00000542460 AKIRIN2Q53H80 203 aa13.47□□□□□ -0.25
LIG1-204ENST00000542460 NMSQ5H8A3 153 aa13.47□□□□□ -0.25
LIG1-204ENST00000542460 C10orf55Q5SWW7 151 aa13.47□□□□□ -0.25
LIG1-204ENST00000542460 ZNF429Q86V71 674 aa13.47□□□□□ -0.25
LIG1-204ENST00000542460 KLHDC1Q8N7A1 406 aa13.47□□□□□ -0.25
LIG1-204ENST00000542460 LFNGQ8NES3 379 aa13.47□□□□□ -0.25
LIG1-204ENST00000542460 OR5B3Q8NH48 314 aa13.47□□□□□ -0.25
LIG1-204ENST00000542460 TMEM68Q96MH6 324 aa13.47□□□□□ -0.25
LIG1-204ENST00000542460 OR51B2Q9Y5P1 312 aa13.47□□□□□ -0.25
LIG1-204ENST00000542460 WSB1Q9Y6I7 421 aa13.47□□□□□ -0.25
LIG1-204ENST00000542460 STAB1Q9NY15 2570 aa13.47□□□□□ -0.25
LIG1-204ENST00000542460 TEX50A0A1B0GTY4 177 aa13.46□□□□□ -0.25
LIG1-204ENST00000542460 OPN1MWP04001 364 aa13.46□□□□□ -0.25
LIG1-204ENST00000542460 HOXB5P09067 269 aa13.46□□□□□ -0.25
LIG1-204ENST00000542460 OPN1MW2P0DN77 364 aa13.46□□□□□ -0.25
LIG1-204ENST00000542460 OPN1MW3P0DN78 364 aa13.46□□□□□ -0.25
LIG1-204ENST00000542460 MYOD1P15172 320 aa13.46□□□□□ -0.25
LIG1-204ENST00000542460 OR2B8PP59922 312 aa13.46□□□□□ -0.25
LIG1-204ENST00000542460 SLC35B1P78383 322 aa13.46□□□□□ -0.25
LIG1-204ENST00000542460 Q6ZRM9 215 aa13.46□□□□□ -0.25
LIG1-204ENST00000542460 C12orf45Q8N5I9 185 aaPredicted RBP13.46□□□□□ -0.25
LIG1-204ENST00000542460 OR1L8Q8NGR8 309 aa13.46□□□□□ -0.25
LIG1-204ENST00000542460 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.46□□□□□ -0.25
LIG1-204ENST00000542460 ZNF257Q9Y2Q1 563 aa13.46□□□□□ -0.25
LIG1-204ENST00000542460 PSMB11A5LHX3 300 aa13.45□□□□□ -0.26
LIG1-204ENST00000542460 DBX1A6NMT0 343 aa13.45□□□□□ -0.26
LIG1-204ENST00000542460 SNRPGP15A8MWD9 76 aa13.45□□□□□ -0.26
LIG1-204ENST00000542460 E7EUB6 86 aa13.45□□□□□ -0.26
LIG1-204ENST00000542460 G3V318 75 aa13.45□□□□□ -0.26
LIG1-204ENST00000542460 OXA1LQ15070 435 aa13.45□□□□□ -0.26
LIG1-204ENST00000542460 ECSCRQ19T08 205 aa13.45□□□□□ -0.26
LIG1-204ENST00000542460 UNQ5815/PRO19632Q6UWF5 114 aa13.45□□□□□ -0.26
LIG1-204ENST00000542460 FYTTD1Q96QD9 318 aaKnown RBP13.45□□□□□ -0.26
LIG1-204ENST00000542460 QTRT1Q9BXR0 403 aaKnown RBP13.45□□□□□ -0.26
LIG1-204ENST00000542460 COA4Q9NYJ1 87 aa13.45□□□□□ -0.26
LIG1-204ENST00000542460 CACNG5Q9UF02 275 aa13.45□□□□□ -0.26
LIG1-204ENST00000542460 A0A1B0GU03 582 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 IFNA21P01568 189 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 TRAPPC2P0DI81 140 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 TRAPPC2BP0DI82 140 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 SULT1A3P0DMM9 295 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 SULT1A4P0DMN0 295 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 HSPE1P61604 102 aaKnown RBP13.44□□□□□ -0.26
LIG1-204ENST00000542460 C19orf54Q5BKX5 351 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 GGNBP1Q5YKI7 109 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 THOC7Q6I9Y2 204 aaKnown RBP13.44□□□□□ -0.26
LIG1-204ENST00000542460 MINDY2Q8NBR6 621 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 WIPF2Q8TF74 440 aaPredicted RBP13.44□□□□□ -0.26
LIG1-204ENST00000542460 NDUFA4L2Q9NRX3 87 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 CACFD1Q9UGQ2 172 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 A0A1B0GW64 132 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 TEX22C9J3V5 150 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 ADAP1O75689 374 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 SLC25A6P12236 298 aa13.44□□□□□ -0.26
LIG1-204ENST00000542460 PPIFP30405 207 aaKnown RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms