RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 TMEM219Q86XT9 240 aa9.83□□□□□ -0.84
CLSTN3-208ENST00000538933 MRPL41Q8IXM3 137 aaKnown RBP9.83□□□□□ -0.84
CLSTN3-208ENST00000538933 GLYATL2Q8WU03 294 aa9.83□□□□□ -0.84
CLSTN3-208ENST00000538933 DPF1Q92782 380 aa9.83□□□□□ -0.84
CLSTN3-208ENST00000538933 RBPMSQ93062 196 aaKnown RBP9.83□□□□□ -0.84
CLSTN3-208ENST00000538933 TSNAXQ99598 290 aaKnown RBP9.83□□□□□ -0.84
CLSTN3-208ENST00000538933 GPR61Q9BZJ8 451 aa9.83□□□□□ -0.84
CLSTN3-208ENST00000538933 OR51J1Q9H342 316 aa9.83□□□□□ -0.84
CLSTN3-208ENST00000538933 PLEKHA2Q9HB19 425 aa9.83□□□□□ -0.84
CLSTN3-208ENST00000538933 hCG_2014768A0A024R1R8 64 aa9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 TCRBV4S1A1TA0A5B7 111 aa9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 NCBP2LA6PVI3 153 aaKnown RBP9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 RBMXL2O75526 392 aaKnown RBP9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 KRASP01116 189 aa9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 IGKV1-16P04430 117 aa9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 HOXB5P09067 269 aa9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 LYL1P12980 280 aa9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 VDAC2P45880 294 aaPredicted RBP9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 LGALS7P47929 136 aa9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 DYNLT3P51808 116 aa9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 MMDQ15546 238 aa9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 ANKRD55Q3KP44 614 aa9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 TMEM177Q53S58 311 aa9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 H2BFWTQ7Z2G1 175 aa9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 THNSL2Q86YJ6 484 aa9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 MITD1Q8WV92 249 aa9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 IL22RA2Q969J5 263 aa9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 EAF1Q96JC9 268 aaPredicted RBP9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 RNF5Q99942 180 aa9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 MED28Q9H204 178 aa9.82□□□□□ -0.84
CLSTN3-208ENST00000538933 A0A0B4J2A0 478 aa9.81□□□□□ -0.84
CLSTN3-208ENST00000538933 DUXBA0A1W2PPF3 345 aa9.81□□□□□ -0.84
CLSTN3-208ENST00000538933 MARCH11A6NNE9 402 aa9.81□□□□□ -0.84
CLSTN3-208ENST00000538933 FAM25EA8MYX2 175 aa9.81□□□□□ -0.84
CLSTN3-208ENST00000538933 CDS2O95674 445 aa9.81□□□□□ -0.84
CLSTN3-208ENST00000538933 G6PCP35575 357 aa9.81□□□□□ -0.84
CLSTN3-208ENST00000538933 ZNF585BQ52M93 769 aa9.81□□□□□ -0.84
CLSTN3-208ENST00000538933 THOC7Q6I9Y2 204 aaKnown RBP9.81□□□□□ -0.84
CLSTN3-208ENST00000538933 SELENOHQ8IZQ5 122 aaKnown RBP9.81□□□□□ -0.84
CLSTN3-208ENST00000538933 SLC35G3Q8N808 338 aa9.81□□□□□ -0.84
CLSTN3-208ENST00000538933 VSTM2AQ8TAG5 236 aa9.81□□□□□ -0.84
CLSTN3-208ENST00000538933 RHOVQ96L33 236 aa9.81□□□□□ -0.84
CLSTN3-208ENST00000538933 SHPKQ9UHJ6 478 aa9.81□□□□□ -0.84
CLSTN3-208ENST00000538933 A0A0B4J293 547 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 C7orf66A4D0T2 115 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 C5orf51A6NDU8 294 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 GOSR2O14653 212 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 NBR2O15453 112 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 SLC25A17O43808 307 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 SNAPC5O75971 98 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 SPDEFO95238 335 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 VDAC1P21796 283 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 C10orf99Q6UWK7 81 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 Q6ZNX1 250 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 LRTM2Q8N967 370 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 TMEM56Q96MV1 263 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 SPIN2AQ99865 258 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 SPIN2BQ9BPZ2 258 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 SLC25A33Q9BSK2 321 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 PDCD10Q9BUL8 212 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 MGAT4CQ9UBM8 478 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 TMED3Q9Y3Q3 217 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 TMEM56-RWDD3S4R434 201 aa9.8□□□□□ -0.84
CLSTN3-208ENST00000538933 C13orf42A0A1B0GVH6 325 aa9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 FAM90A9PA6NNJ1 464 aa9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 ACTL6BO94805 426 aa9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 OR2A4O95047 310 aa9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 SAA1P0DJI8 122 aaPredicted RBP9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 BRWD1-AS2P59051 145 aa9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 EBI3Q14213 229 aa9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 GSG1LQ6UXU4 331 aa9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 LYZL2Q7Z4W2 148 aa9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 CENPVQ7Z7K6 275 aaPredicted RBP9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 FAM219AQ8IW50 185 aa9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 VKORC1L1Q8N0U8 176 aa9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 OR8H1Q8NGG4 311 aa9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 OR4A16Q8NH70 328 aa9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 LHFPL5Q8TAF8 219 aa9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 RBMXL1Q96E39 390 aaKnown RBP9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 OR2A7Q96R45 310 aa9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 RASL11BQ9BPW5 248 aa9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 TMEM140Q9NV12 185 aa9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 METTL1Q9UBP6 276 aaKnown RBP9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 MOB4Q9Y3A3 225 aa9.79□□□□□ -0.84
CLSTN3-208ENST00000538933 CCSO14618 274 aa9.78□□□□□ -0.84
CLSTN3-208ENST00000538933 RRHO14718 337 aa9.78□□□□□ -0.84
CLSTN3-208ENST00000538933 ADAP1O75689 374 aa9.78□□□□□ -0.84
CLSTN3-208ENST00000538933 OR2F2O95006 317 aa9.78□□□□□ -0.84
CLSTN3-208ENST00000538933 IGKV1-39P01597 117 aa9.78□□□□□ -0.84
CLSTN3-208ENST00000538933 IGKV1D-39P04432 117 aa9.78□□□□□ -0.84
CLSTN3-208ENST00000538933 CNTFRP26992 372 aa9.78□□□□□ -0.84
CLSTN3-208ENST00000538933 UBE2KP61086 200 aa9.78□□□□□ -0.84
CLSTN3-208ENST00000538933 RRAS2P62070 204 aaPredicted RBP9.78□□□□□ -0.84
CLSTN3-208ENST00000538933 PSG5Q15238 335 aa9.78□□□□□ -0.84
CLSTN3-208ENST00000538933 GGNBP1Q5YKI7 109 aa9.78□□□□□ -0.84
CLSTN3-208ENST00000538933 OR4A47Q6IF82 309 aa9.78□□□□□ -0.84
CLSTN3-208ENST00000538933 C16orf82Q7Z2V1 217 aa9.78□□□□□ -0.84
CLSTN3-208ENST00000538933 OR4A5Q8NH83 315 aa9.78□□□□□ -0.84
CLSTN3-208ENST00000538933 OR1S1Q8NH92 325 aa9.78□□□□□ -0.84
CLSTN3-208ENST00000538933 LSM10Q969L4 123 aaKnown RBP9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms