RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 MSMO1Q15800 293 aa12.17□□□□□ -0.46
CHMP4A-207ENST00000533523 ECSCRQ19T08 205 aa12.17□□□□□ -0.46
CHMP4A-207ENST00000533523 C5orf64Q2M2E5 130 aa12.17□□□□□ -0.46
CHMP4A-207ENST00000533523 ZFAND6Q6FIF0 208 aa12.17□□□□□ -0.46
CHMP4A-207ENST00000533523 GLDNQ6ZMI3 551 aaPredicted RBP12.17□□□□□ -0.46
CHMP4A-207ENST00000533523 Q6ZNX1 250 aa12.17□□□□□ -0.46
CHMP4A-207ENST00000533523 SLC25A42Q86VD7 318 aa12.17□□□□□ -0.46
CHMP4A-207ENST00000533523 BVESQ8NE79 360 aa12.17□□□□□ -0.46
CHMP4A-207ENST00000533523 TMEM230Q96A57 120 aa12.17□□□□□ -0.46
CHMP4A-207ENST00000533523 OR51J1Q9H342 316 aa12.17□□□□□ -0.46
CHMP4A-207ENST00000533523 SLC2A9Q9NRM0 540 aa12.17□□□□□ -0.46
CHMP4A-207ENST00000533523 M0R1X1 148 aa12.16□□□□□ -0.46
CHMP4A-207ENST00000533523 GP9P14770 177 aa12.16□□□□□ -0.46
CHMP4A-207ENST00000533523 AKR1C4P17516 323 aa12.16□□□□□ -0.46
CHMP4A-207ENST00000533523 MECP2P51608 486 aaKnown RBP12.16□□□□□ -0.46
CHMP4A-207ENST00000533523 RND3P61587 244 aa12.16□□□□□ -0.46
CHMP4A-207ENST00000533523 TAGLNQ01995 201 aaKnown RBP12.16□□□□□ -0.46
CHMP4A-207ENST00000533523 KIAA0141Q14154 515 aaPredicted RBP12.16□□□□□ -0.46
CHMP4A-207ENST00000533523 PDPNQ86YL7 162 aa12.16□□□□□ -0.46
CHMP4A-207ENST00000533523 CMTM1Q8IZ96 169 aa12.16□□□□□ -0.46
CHMP4A-207ENST00000533523 CCDC71LQ8N9Z2 235 aa12.16□□□□□ -0.46
CHMP4A-207ENST00000533523 ZBTB34Q8NCN2 500 aa12.16□□□□□ -0.46
CHMP4A-207ENST00000533523 SDHAF2Q9NX18 166 aa12.16□□□□□ -0.46
CHMP4A-207ENST00000533523 IGHV7-81A0A0B4J1V7 117 aa12.15□□□□□ -0.46
CHMP4A-207ENST00000533523 LINC01619G3V211 115 aa12.15□□□□□ -0.46
CHMP4A-207ENST00000533523 TNFSF12O43508 249 aa12.15□□□□□ -0.46
CHMP4A-207ENST00000533523 SPDEFO95238 335 aa12.15□□□□□ -0.46
CHMP4A-207ENST00000533523 DHFRP00374 187 aa12.15□□□□□ -0.46
CHMP4A-207ENST00000533523 IGLV1-40P01703 118 aa12.15□□□□□ -0.46
CHMP4A-207ENST00000533523 IL5P05113 134 aa12.15□□□□□ -0.46
CHMP4A-207ENST00000533523 S100GP29377 79 aa12.15□□□□□ -0.46
CHMP4A-207ENST00000533523 RAB9AP51151 201 aa12.15□□□□□ -0.46
CHMP4A-207ENST00000533523 UBE2MP61081 183 aaKnown RBP12.15□□□□□ -0.46
CHMP4A-207ENST00000533523 CBX3Q13185 183 aa12.15□□□□□ -0.46
CHMP4A-207ENST00000533523 PLGLAQ15195 96 aa12.15□□□□□ -0.46
CHMP4A-207ENST00000533523 LIN54Q6MZP7 749 aa12.15□□□□□ -0.46
CHMP4A-207ENST00000533523 ARPC1AQ92747 370 aa12.15□□□□□ -0.46
CHMP4A-207ENST00000533523 DLX4Q92988 240 aaPredicted RBP12.15□□□□□ -0.46
CHMP4A-207ENST00000533523 RITA1Q96K30 269 aa12.15□□□□□ -0.46
CHMP4A-207ENST00000533523 GPHA2Q96T91 129 aa12.15□□□□□ -0.46
CHMP4A-207ENST00000533523 TSNAXQ99598 290 aaKnown RBP12.15□□□□□ -0.46
CHMP4A-207ENST00000533523 SEC22CQ9BRL7 303 aa12.15□□□□□ -0.46
CHMP4A-207ENST00000533523 A0A0B4J293 547 aa12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 A0A1W2PN81 502 aa12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 CRYM-AS1A6NIL9 109 aa12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 RRHO14718 337 aa12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 MPPED1O15442 326 aa12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 PRAF2O60831 178 aa12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 PGLYRP1O75594 196 aaPredicted RBP12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 OR4E1P0C645 316 aa12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 CHRNA7P36544 502 aa12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 NDPQ00604 133 aa12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 PPP1R1AQ13522 171 aa12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 EIF4EBP1Q13541 118 aaPredicted RBP12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 TATDN3Q17R31 274 aa12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 C4orf46Q504U0 113 aa12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 TMEM128Q5BJH2 165 aa12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 TBC1D26Q86UD7 250 aa12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 ZNF383Q8NA42 475 aa12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 DRAXINQ8NBI3 349 aaPredicted RBP12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 CASTOR1Q8WTX7 329 aa12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 ADTRPQ96IZ2 230 aa12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 NAA60Q9H7X0 242 aa12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 SLC35D1Q9NTN3 355 aa12.14□□□□□ -0.47
CHMP4A-207ENST00000533523 HECTD4Q9Y4D8 3996 aa12.13□□□□□ -0.47
CHMP4A-207ENST00000533523 TEX13DA0A0J9YY54 714 aaPredicted RBP12.13□□□□□ -0.47
CHMP4A-207ENST00000533523 PROP1O75360 226 aa12.13□□□□□ -0.47
CHMP4A-207ENST00000533523 RRASP10301 218 aa12.13□□□□□ -0.47
CHMP4A-207ENST00000533523 DHODHQ02127 395 aa12.13□□□□□ -0.47
CHMP4A-207ENST00000533523 SGPP2Q8IWX5 399 aa12.13□□□□□ -0.47
CHMP4A-207ENST00000533523 OR51H1Q8NH63 302 aa12.13□□□□□ -0.47
CHMP4A-207ENST00000533523 ABHD5Q8WTS1 349 aa12.13□□□□□ -0.47
CHMP4A-207ENST00000533523 FLYWCH2Q96CP2 140 aaKnown RBP12.13□□□□□ -0.47
CHMP4A-207ENST00000533523 CITED4Q96RK1 184 aa12.13□□□□□ -0.47
CHMP4A-207ENST00000533523 FBXL15Q9H469 300 aa12.13□□□□□ -0.47
CHMP4A-207ENST00000533523 FOXA2Q9Y261 457 aaPredicted RBP12.13□□□□□ -0.47
CHMP4A-207ENST00000533523 ALG5Q9Y673 324 aa12.13□□□□□ -0.47
CHMP4A-207ENST00000533523 IGHV4OR15-8A0A075B7B6 117 aa12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 A0A087WW49 117 aa12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 A0A1B0GVG6 124 aa12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 C9orf170A2RU37 121 aa12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 SFT2D2O95562 160 aa12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 LGALS1P09382 135 aaKnown RBP12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 VAMP1P23763 118 aa12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 RPS16P62249 146 aaKnown RBP12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 RPL30P62888 115 aaKnown RBP12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 SUPT4H1P63272 117 aaKnown RBP12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 DHRS2Q13268 280 aa12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 RTL8BQ17RB0 113 aa12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 ZNF66Q6ZN08 573 aa12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 LYG2Q86SG7 212 aa12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 HAPLN4Q86UW8 402 aa12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 OR52B4Q8NGK2 314 aa12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 HSD17B10Q99714 261 aaKnown RBP12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 GPN1Q9HCN4 374 aaPredicted RBP12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 METTL1Q9UBP6 276 aaKnown RBP12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 FBXO7Q9Y3I1 522 aa12.12□□□□□ -0.47
CHMP4A-207ENST00000533523 C7orf66A4D0T2 115 aa12.11□□□□□ -0.47
CHMP4A-207ENST00000533523 IGHV3-11P01762 117 aa12.11□□□□□ -0.47
CHMP4A-207ENST00000533523 HLA-AP01891 365 aaKnown RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 179 ms