RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 DKK4Q9UBT3 224 aa15.89■□□□□ 0.13
VPS28-213ENST00000530983 DSCAML1Q8TD84 2053 aa15.89■□□□□ 0.13
VPS28-213ENST00000530983 M0R143 59 aa15.89■□□□□ 0.13
VPS28-213ENST00000530983 IGFL2Q6UWQ7 119 aa15.89■□□□□ 0.13
VPS28-213ENST00000530983 GBGT1Q8N5D6 347 aa15.89■□□□□ 0.13
VPS28-213ENST00000530983 TMEM204Q9BSN7 226 aa15.89■□□□□ 0.13
VPS28-213ENST00000530983 TCF19Q9Y242 345 aa15.89■□□□□ 0.13
VPS28-213ENST00000530983 LSM4Q9Y4Z0 139 aaKnown RBP15.89■□□□□ 0.13
VPS28-213ENST00000530983 CGAP01215 116 aa15.88■□□□□ 0.13
VPS28-213ENST00000530983 CFHR2P36980 270 aa15.88■□□□□ 0.13
VPS28-213ENST00000530983 BHLHA15Q7RTS1 189 aaPredicted RBP15.88■□□□□ 0.13
VPS28-213ENST00000530983 C1orf174Q8IYL3 243 aa15.88■□□□□ 0.13
VPS28-213ENST00000530983 SLC25A15Q9Y619 301 aa15.88■□□□□ 0.13
VPS28-213ENST00000530983 DSCAMO60469 2012 aa15.88■□□□□ 0.13
VPS28-213ENST00000530983 CXorf1O96002 111 aa15.88■□□□□ 0.13
VPS28-213ENST00000530983 TDGF1P3P51864 188 aa15.88■□□□□ 0.13
VPS28-213ENST00000530983 PPP1R35Q8TAP8 253 aa15.88■□□□□ 0.13
VPS28-213ENST00000530983 LEAP2Q969E1 77 aa15.88■□□□□ 0.13
VPS28-213ENST00000530983 SFRP2Q96HF1 295 aa15.88■□□□□ 0.13
VPS28-213ENST00000530983 IMMP2LQ96T52 175 aa15.88■□□□□ 0.13
VPS28-213ENST00000530983 CALYQ9NYX4 217 aa15.88■□□□□ 0.13
VPS28-213ENST00000530983 POLR3KQ9Y2Y1 108 aaPredicted RBP15.88■□□□□ 0.13
VPS28-213ENST00000530983 CADP27708 2225 aa15.88■□□□□ 0.13
VPS28-213ENST00000530983 TRGV8A0A0C4DH27 118 aa15.87■□□□□ 0.13
VPS28-213ENST00000530983 CNN1P51911 297 aaKnown RBP15.87■□□□□ 0.13
VPS28-213ENST00000530983 FOXL1Q12952 345 aa15.87■□□□□ 0.13
VPS28-213ENST00000530983 C1orf194Q5T5A4 169 aa15.87■□□□□ 0.13
VPS28-213ENST00000530983 SSMEM1Q8WWF3 244 aa15.87■□□□□ 0.13
VPS28-213ENST00000530983 OR2V2Q96R30 315 aa15.87■□□□□ 0.13
VPS28-213ENST00000530983 TXNDC17Q9BRA2 123 aa15.87■□□□□ 0.13
VPS28-213ENST00000530983 FKBP11Q9NYL4 201 aa15.87■□□□□ 0.13
VPS28-213ENST00000530983 PROCRQ9UNN8 238 aa15.87■□□□□ 0.13
VPS28-213ENST00000530983 TRAV17A0A0B4J275 112 aa15.86■□□□□ 0.13
VPS28-213ENST00000530983 A0A0U1RQK1 487 aa15.86■□□□□ 0.13
VPS28-213ENST00000530983 SCO2A0A1W2PP80 73 aa15.86■□□□□ 0.13
VPS28-213ENST00000530983 ZNF320A2RRD8 509 aa15.86■□□□□ 0.13
VPS28-213ENST00000530983 SCGB1D1O95968 90 aa15.86■□□□□ 0.13
VPS28-213ENST00000530983 WT1P19544 449 aaPredicted RBP15.86■□□□□ 0.13
VPS28-213ENST00000530983 ARSJQ5FYB0 599 aaPredicted RBP15.86■□□□□ 0.13
VPS28-213ENST00000530983 MOGAT3Q86VF5 341 aa15.86■□□□□ 0.13
VPS28-213ENST00000530983 SVILO95425 2214 aa15.86■□□□□ 0.13
VPS28-213ENST00000530983 C15orf61A6NNL5 157 aa15.86■□□□□ 0.13
VPS28-213ENST00000530983 CGB3P0DN86 165 aa15.86■□□□□ 0.13
VPS28-213ENST00000530983 CGB7P0DN87 165 aa15.86■□□□□ 0.13
VPS28-213ENST00000530983 ZNF25P17030 456 aaPredicted RBP15.86■□□□□ 0.13
VPS28-213ENST00000530983 RAB4AP20338 218 aa15.86■□□□□ 0.13
VPS28-213ENST00000530983 KIR2DS2P43631 304 aa15.86■□□□□ 0.13
VPS28-213ENST00000530983 OR4S2Q8NH73 311 aa15.86■□□□□ 0.13
VPS28-213ENST00000530983 NPVFQ9HCQ7 196 aa15.86■□□□□ 0.13
VPS28-213ENST00000530983 YTHDF2Q9Y5A9 579 aaKnown RBP15.86■□□□□ 0.13
VPS28-213ENST00000530983 KIR2DL5BA0A0G2JN68 375 aa15.85■□□□□ 0.13
VPS28-213ENST00000530983 KIR2DL5BA0A0G2JPC4 375 aa15.85■□□□□ 0.13
VPS28-213ENST00000530983 IL6RP08887 468 aaPredicted RBP15.85■□□□□ 0.13
VPS28-213ENST00000530983 COL8A2P25067 703 aa15.85■□□□□ 0.13
VPS28-213ENST00000530983 KIR2DL5AQ8N109 375 aa15.85■□□□□ 0.13
VPS28-213ENST00000530983 FAM169BQ8N8A8 192 aa15.85■□□□□ 0.13
VPS28-213ENST00000530983 SGMS2Q8NHU3 365 aa15.85■□□□□ 0.13
VPS28-213ENST00000530983 BOD1L1Q8NFC6 3051 aa15.85■□□□□ 0.13
VPS28-213ENST00000530983 TANC2Q9HCD6 1990 aa15.85■□□□□ 0.13
VPS28-213ENST00000530983 C17orf58Q2M2W7 97 aa15.85■□□□□ 0.13
VPS28-213ENST00000530983 CT45A1Q5HYN5 189 aa15.85■□□□□ 0.13
VPS28-213ENST00000530983 SEM1Q6ZVN7 128 aa15.85■□□□□ 0.13
VPS28-213ENST00000530983 CT45A3Q8NHU0 189 aa15.85■□□□□ 0.13
VPS28-213ENST00000530983 SEPSECSQ9HD40 501 aaKnown RBP15.85■□□□□ 0.13
VPS28-213ENST00000530983 ELOVL5Q9NYP7 299 aa15.85■□□□□ 0.13
VPS28-213ENST00000530983 TRAPPC1Q9Y5R8 145 aa15.85■□□□□ 0.13
VPS28-213ENST00000530983 SAA2-SAA4A0A096LPE2 208 aa15.84■□□□□ 0.13
VPS28-213ENST00000530983 A0A1B0GUS0 222 aa15.84■□□□□ 0.13
VPS28-213ENST00000530983 LHBP01229 141 aa15.84■□□□□ 0.13
VPS28-213ENST00000530983 SAA2P0DJI9 122 aaPredicted RBP15.84■□□□□ 0.13
VPS28-213ENST00000530983 ZNF83P51522 516 aa15.84■□□□□ 0.13
VPS28-213ENST00000530983 EFNB3Q15768 340 aa15.84■□□□□ 0.13
VPS28-213ENST00000530983 SPATA31B1PQ5VZV4 182 aa15.84■□□□□ 0.13
VPS28-213ENST00000530983 ALKBH2Q6NS38 261 aa15.84■□□□□ 0.13
VPS28-213ENST00000530983 PPP1R14DQ9NXH3 145 aa15.84■□□□□ 0.13
VPS28-213ENST00000530983 AHRRA9YTQ3 701 aa15.84■□□□□ 0.13
VPS28-213ENST00000530983 FAM201AQ5SY85 155 aa15.84■□□□□ 0.13
VPS28-213ENST00000530983 OR4A47Q6IF82 309 aa15.84■□□□□ 0.13
VPS28-213ENST00000530983 TMEM256Q8N2U0 113 aa15.84■□□□□ 0.13
VPS28-213ENST00000530983 BTF3L4Q96K17 158 aa15.84■□□□□ 0.13
VPS28-213ENST00000530983 TMEM14BQ9NUH8 114 aa15.84■□□□□ 0.13
VPS28-213ENST00000530983 MDFIC2A0A1B0GVS7 189 aa15.83■□□□□ 0.12
VPS28-213ENST00000530983 GCHFRP30047 84 aa15.83■□□□□ 0.12
VPS28-213ENST00000530983 RAB7AP51149 207 aa15.83■□□□□ 0.12
VPS28-213ENST00000530983 TEPPQ6URK8 271 aa15.83■□□□□ 0.12
VPS28-213ENST00000530983 STPG3Q8N7X2 389 aa15.83■□□□□ 0.12
VPS28-213ENST00000530983 SLC24A4Q8NFF2 622 aa15.83■□□□□ 0.12
VPS28-213ENST00000530983 OCC1Q8TAD7 63 aa15.83■□□□□ 0.12
VPS28-213ENST00000530983 NAGKQ9UJ70 344 aa15.83■□□□□ 0.12
VPS28-213ENST00000530983 FOXA2Q9Y261 457 aaPredicted RBP15.83■□□□□ 0.12
VPS28-213ENST00000530983 ITGB1BP1O14713 200 aa15.83■□□□□ 0.12
VPS28-213ENST00000530983 NUPR1O60356 82 aa15.83■□□□□ 0.12
VPS28-213ENST00000530983 HNF1AP20823 631 aa15.83■□□□□ 0.12
VPS28-213ENST00000530983 NPY1RP25929 384 aa15.83■□□□□ 0.12
VPS28-213ENST00000530983 TIMP3P35625 211 aa15.83■□□□□ 0.12
VPS28-213ENST00000530983 RELQ04864 619 aaPredicted RBP15.83■□□□□ 0.12
VPS28-213ENST00000530983 DUX4L9Q6RFH8 374 aaPredicted RBP15.82■□□□□ 0.12
VPS28-213ENST00000530983 PIP4P1Q86T03 277 aa15.82■□□□□ 0.12
VPS28-213ENST00000530983 MRPL52Q86TS9 123 aaKnown RBP15.82■□□□□ 0.12
VPS28-213ENST00000530983 ITLN1Q8WWA0 313 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms