RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 SNRNP70P08621 437 aaKnown RBP5.9□□□□□ -1.46
CD44-228ENST00000528455 SULT1A3P0DMM9 295 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 SULT1A4P0DMN0 295 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 RRAS2P62070 204 aaPredicted RBP5.9□□□□□ -1.46
CD44-228ENST00000528455 GSG1LQ6UXU4 331 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 H2BFWTQ7Z2G1 175 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 C16orf82Q7Z2V1 217 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 TMEM86BQ8N661 226 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 SLC35G3Q8N808 338 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 OR4A5Q8NH83 315 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 OR5R1Q8NH85 324 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 LHFPL5Q8TAF8 219 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 ASB13Q8WXK3 278 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 RITA1Q96K30 269 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 RBM14Q96PK6 669 aaKnown RBP5.9□□□□□ -1.46
CD44-228ENST00000528455 OR2A7Q96R45 310 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.9□□□□□ -1.46
CD44-228ENST00000528455 COA4Q9NYJ1 87 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 BET1LQ9NYM9 111 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 POMT1Q9Y6A1 747 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 IGHV3-72A0A0B4J1Y9 119 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 MARCH11A6NNE9 402 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 M0QZK8 103 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 RRHO14718 337 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 SNAPC5O75971 98 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 NDUFA3O95167 84 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 SPDEFO95238 335 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 IGKV1-5P01602 117 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 IGLV2-23P01705 113 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 HOXB5P09067 269 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 P0C879 139 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 TRAPPC2P0DI81 140 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 TRAPPC2BP0DI82 140 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 PAX6P26367 422 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 MAS1LP35410 378 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 G6PCP35575 357 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 UBE2KP61086 200 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 ERVK-16P61578 105 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 SRSF4Q08170 494 aaKnown RBP5.89□□□□□ -1.47
CD44-228ENST00000528455 HES1Q14469 280 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 PSG5Q15238 335 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 VMA21Q3ZAQ7 101 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 GAGE13Q4V321 117 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 NMSQ5H8A3 153 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 OR2B11Q5JQS5 317 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 GGNBP1Q5YKI7 109 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 OR4A47Q6IF82 309 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 RBMS3Q6XE24 437 aaKnown RBP5.89□□□□□ -1.47
CD44-228ENST00000528455 ZNF429Q86V71 674 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 PPP1R27Q86WC6 154 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 PUSL1Q8N0Z8 303 aaKnown RBP5.89□□□□□ -1.47
CD44-228ENST00000528455 DMBX1Q8NFW5 382 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 TMEM167AQ8TBQ9 72 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 SSMEM1Q8WWF3 244 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 GPR146Q96CH1 333 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 C2orf50Q96LR7 162 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 HARBI1Q96MB7 349 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 SPIN2AQ99865 258 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 SPIN2BQ9BPZ2 258 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 KIAA1456Q9P272 454 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 TCF19Q9Y242 345 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 SIGLEC9Q9Y336 463 aa5.89□□□□□ -1.47
CD44-228ENST00000528455 SOX21Q9Y651 276 aaPredicted RBP5.89□□□□□ -1.47
CD44-228ENST00000528455 A0A1B0GVG6 124 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 C13orf42A0A1B0GVH6 325 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 C5orf51A6NDU8 294 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 A6NDX4 124 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 FAM90A26D6RGX4 464 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 H3BUX3 64 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 UPK2O00526 184 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 NBR2O15453 112 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 FGF16O43320 207 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 TCF21O43680 179 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 PITX3O75364 302 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 ADAP1O75689 374 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 KBTBD11O94819 623 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 OR2F2O95006 317 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 TMEM11P17152 192 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 CD24P25063 80 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 BCAP31P51572 246 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 AKR1C2P52895 323 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 F2RL1P55085 397 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 IL15RAQ13261 267 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 HNF4GQ14541 408 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 SMCO1Q147U7 214 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 C5orf64Q2M2E5 130 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 C2orf68Q2NKX9 166 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 AARDQ4LEZ3 155 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 ZNF562Q6V9R5 426 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 Q6ZRM9 215 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 MMD2Q8IY49 270 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 OR52E5Q8NH55 327 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 OR4A16Q8NH70 328 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 C22orf15Q8WYQ4 148 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 OR10C1Q96KK4 312 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 ZNF48Q96MX3 618 aaPredicted RBP5.88□□□□□ -1.47
CD44-228ENST00000528455 NMES1Q9C002 83 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 ZFP57Q9NU63 452 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 ZNF257Q9Y2Q1 563 aa5.88□□□□□ -1.47
CD44-228ENST00000528455 TEX50A0A1B0GTY4 177 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms