RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 MED28Q9H204 178 aa3.42□□□□□ -1.86
CD44-226ENST00000527889 LIME1Q9H400 295 aa3.42□□□□□ -1.86
CD44-226ENST00000527889 ZNF430Q9H8G1 570 aaPredicted RBP3.42□□□□□ -1.86
CD44-226ENST00000527889 Q9N2K0 584 aa3.42□□□□□ -1.86
CD44-226ENST00000527889 SIRT7Q9NRC8 400 aa3.42□□□□□ -1.86
CD44-226ENST00000527889 NECAP2Q9NVZ3 263 aa3.42□□□□□ -1.86
CD44-226ENST00000527889 GSKIPQ9P0R6 139 aa3.42□□□□□ -1.86
CD44-226ENST00000527889 GLS2Q9UI32 602 aa3.42□□□□□ -1.86
CD44-226ENST00000527889 KIF25Q9UIL4 384 aa3.42□□□□□ -1.86
CD44-226ENST00000527889 ZNF222Q9UK12 451 aa3.42□□□□□ -1.86
CD44-226ENST00000527889 ZNF221Q9UK13 617 aa3.42□□□□□ -1.86
CD44-226ENST00000527889 RNF150Q9ULK6 438 aa3.42□□□□□ -1.86
CD44-226ENST00000527889 GOLT1BQ9Y3E0 138 aa3.42□□□□□ -1.86
CD44-226ENST00000527889 WNK1Q9H4A3 2382 aa3.42□□□□□ -1.86
CD44-226ENST00000527889 MXRA5Q9NR99 2828 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 MEIKINA0A087WXM9 373 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 TRBV6-6A0A0A6YYG2 114 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 IGKV1D-13A0A0B4J2D9 117 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 A0A1B0GV90 55 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 TMEM30CPA0ZSE6 113 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 TRDCB7Z8K6 153 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 TMEM178BH3BS89 294 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 FABP7O15540 132 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 SPINT2O43291 252 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 PRAF2O60831 178 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 RAMP3O60896 148 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 ZNF737O75373 536 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 SIX6O95475 246 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 CD8AP01732 235 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 IL5P05113 134 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 SOD3P08294 240 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 IGKV1-13P0DP09 117 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 SCGB1A1P11684 91 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 ANXA3P12429 323 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 AKR1C4P17516 323 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 CXCL3P19876 107 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 AADACP22760 399 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 COL8A2P25067 703 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 FCGR2CP31995 323 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 CFHR2P36980 270 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 MDH2P40926 338 aaKnown RBP3.41□□□□□ -1.86
CD44-226ENST00000527889 GLP1RP43220 463 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 GLIPR1P48060 266 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 HERV-K104P61576 105 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 HERV-K104P63124 156 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 LCN2P80188 198 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 SSBP2P81877 361 aaPredicted RBP3.41□□□□□ -1.86
CD44-226ENST00000527889 DHRS2Q13268 280 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 PPP1R1AQ13522 171 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 GRK1Q15835 563 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 DCAF12L2Q5VW00 463 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 ZNF626Q68DY1 528 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 STUMQ69YW2 141 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 C11orf71Q6IPW1 123 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 FAM53AQ6NSI3 398 aaPredicted RBP3.41□□□□□ -1.86
CD44-226ENST00000527889 Q6ZS49 121 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 ACOT7LQ6ZUV0 252 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 MOB1BQ7L9L4 216 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 S100A7AQ86SG5 101 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 SLC25A42Q86VD7 318 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 Q8N1X5 172 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 MUC20Q8N307 709 aaPredicted RBP3.41□□□□□ -1.86
CD44-226ENST00000527889 ARRDC1Q8N5I2 433 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 FAM216BQ8N7L0 139 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 ZDHHC22Q8N966 263 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 ZNRF1Q8ND25 227 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 OR1L4Q8NGR5 311 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 OR6F1Q8NGZ6 308 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 CASTOR1Q8WTX7 329 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 IL1F10Q8WWZ1 152 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 CCL17Q92583 94 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 NRGNQ92686 78 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 LHX4Q969G2 390 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 TMEM230Q96A57 120 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 GAFA1Q96PS6 74 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 CCL13Q99616 98 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 PHB2Q99623 299 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 SLC25A21Q9BQT8 299 aaPredicted RBP3.41□□□□□ -1.86
CD44-226ENST00000527889 C2orf88Q9BSF0 95 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 RTBDNQ9BSG5 229 aaPredicted RBP3.41□□□□□ -1.86
CD44-226ENST00000527889 SHARPINQ9H0F6 387 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 PARP12Q9H0J9 701 aaKnown RBP3.41□□□□□ -1.86
CD44-226ENST00000527889 C5orf66Q9H5L9 145 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 TAF9BQ9HBM6 251 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 SLC2A9Q9NRM0 540 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 TMEM106BQ9NUM4 274 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 RASL12Q9NYN1 266 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 MSRB1Q9NZV6 116 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 OR1A1Q9P1Q5 309 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 TRAPPC2LQ9UL33 140 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 GPR132Q9UNW8 380 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 PSG11Q9UQ72 335 aa3.41□□□□□ -1.86
CD44-226ENST00000527889 TSSC4Q9Y5U2 329 aaPredicted RBP3.41□□□□□ -1.86
CD44-226ENST00000527889 PPIAL4EA0A075B759 164 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 IGHV3-43A0A0B4J1X8 118 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 TRAV38-1A0A0B4J264 116 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 IGHV1-69-2A0A0G2JMI3 117 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 KIR2DS1A0A191URI9 304 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 ODAMA1E959 279 aa3.4□□□□□ -1.87
CD44-226ENST00000527889 C9orf170A2RU37 121 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms