RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 FKBP11Q9NYL4 201 aa12.54□□□□□ -0.4
LSM1-205ENST00000523511 PEMTQ9UBM1 199 aa12.54□□□□□ -0.4
LSM1-205ENST00000523511 NOTCH3Q9UM47 2321 aa12.53□□□□□ -0.4
LSM1-205ENST00000523511 CRYGCP07315 174 aa12.53□□□□□ -0.4
LSM1-205ENST00000523511 NHLRC4P0CG21 123 aaPredicted RBP12.53□□□□□ -0.4
LSM1-205ENST00000523511 PSMB6P28072 239 aa12.53□□□□□ -0.4
LSM1-205ENST00000523511 ARRDC1Q8N5I2 433 aa12.53□□□□□ -0.4
LSM1-205ENST00000523511 B9D2Q9BPU9 175 aa12.53□□□□□ -0.4
LSM1-205ENST00000523511 RSRP1Q9BUV0 290 aa12.53□□□□□ -0.4
LSM1-205ENST00000523511 TMEM140Q9NV12 185 aa12.53□□□□□ -0.4
LSM1-205ENST00000523511 HMX3A6NHT5 357 aa12.52□□□□□ -0.41
LSM1-205ENST00000523511 MARCH11A6NNE9 402 aa12.52□□□□□ -0.41
LSM1-205ENST00000523511 TEX22C9J3V5 150 aa12.52□□□□□ -0.41
LSM1-205ENST00000523511 H0Y980 276 aa12.52□□□□□ -0.41
LSM1-205ENST00000523511 IL6RP08887 468 aaPredicted RBP12.52□□□□□ -0.41
LSM1-205ENST00000523511 LPAR6P43657 344 aa12.52□□□□□ -0.41
LSM1-205ENST00000523511 SSBP1Q04837 148 aaKnown RBP12.52□□□□□ -0.41
LSM1-205ENST00000523511 KLF5Q13887 457 aaPredicted RBP12.52□□□□□ -0.41
LSM1-205ENST00000523511 C15orf32Q32M92 178 aa12.52□□□□□ -0.41
LSM1-205ENST00000523511 C10orf55Q5SWW7 151 aa12.52□□□□□ -0.41
LSM1-205ENST00000523511 OR9G4Q8NGQ1 327 aa12.52□□□□□ -0.41
LSM1-205ENST00000523511 ZNF486Q96H40 463 aaPredicted RBP12.52□□□□□ -0.41
LSM1-205ENST00000523511 CXorf58Q96LI9 332 aa12.52□□□□□ -0.41
LSM1-205ENST00000523511 PRR25Q96S07 402 aa12.52□□□□□ -0.41
LSM1-205ENST00000523511 FBXL7Q9UJT9 491 aa12.52□□□□□ -0.41
LSM1-205ENST00000523511 GABARAPH6UMI1 98 aa12.51□□□□□ -0.41
LSM1-205ENST00000523511 OR2J3O76001 311 aa12.51□□□□□ -0.41
LSM1-205ENST00000523511 ATG12O94817 140 aa12.51□□□□□ -0.41
LSM1-205ENST00000523511 S1PR2O95136 353 aa12.51□□□□□ -0.41
LSM1-205ENST00000523511 KRASP01116 189 aa12.51□□□□□ -0.41
LSM1-205ENST00000523511 PRH1P02810 166 aa12.51□□□□□ -0.41
LSM1-205ENST00000523511 TAS2R19P59542 299 aa12.51□□□□□ -0.41
LSM1-205ENST00000523511 EXOSC2Q13868 293 aaKnown RBP12.51□□□□□ -0.41
LSM1-205ENST00000523511 PHLDA2Q53GA4 152 aa12.51□□□□□ -0.41
LSM1-205ENST00000523511 OR1L8Q8NGR8 309 aa12.51□□□□□ -0.41
LSM1-205ENST00000523511 EEF1AKMT3Q96AZ1 226 aa12.51□□□□□ -0.41
LSM1-205ENST00000523511 QTRT1Q9BXR0 403 aaKnown RBP12.51□□□□□ -0.41
LSM1-205ENST00000523511 KLK11Q9UBX7 282 aa12.51□□□□□ -0.41
LSM1-205ENST00000523511 MTFP1Q9UDX5 166 aa12.51□□□□□ -0.41
LSM1-205ENST00000523511 PRNDQ9UKY0 176 aa12.51□□□□□ -0.41
LSM1-205ENST00000523511 SMAD5-AS1Q9Y6J3 95 aa12.51□□□□□ -0.41
LSM1-205ENST00000523511 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.5□□□□□ -0.41
LSM1-205ENST00000523511 GGCTO75223 188 aaKnown RBP12.5□□□□□ -0.41
LSM1-205ENST00000523511 SERPINE2P07093 398 aa12.5□□□□□ -0.41
LSM1-205ENST00000523511 TRAPPC2P0DI81 140 aa12.5□□□□□ -0.41
LSM1-205ENST00000523511 TRAPPC2BP0DI82 140 aa12.5□□□□□ -0.41
LSM1-205ENST00000523511 PGAM2P15259 253 aa12.5□□□□□ -0.41
LSM1-205ENST00000523511 CTRB1P17538 263 aa12.5□□□□□ -0.41
LSM1-205ENST00000523511 SYNJ2BPP57105 145 aa12.5□□□□□ -0.41
LSM1-205ENST00000523511 OR2B8PP59922 312 aa12.5□□□□□ -0.41
LSM1-205ENST00000523511 CTRB2Q6GPI1 263 aa12.5□□□□□ -0.41
LSM1-205ENST00000523511 TMEM229BQ8NBD8 167 aa12.5□□□□□ -0.41
LSM1-205ENST00000523511 OR52I2Q8NH67 350 aa12.5□□□□□ -0.41
LSM1-205ENST00000523511 ZFAND1Q8TCF1 268 aa12.5□□□□□ -0.41
LSM1-205ENST00000523511 TMEM56Q96MV1 263 aa12.5□□□□□ -0.41
LSM1-205ENST00000523511 ABHD1Q96SE0 405 aa12.5□□□□□ -0.41
LSM1-205ENST00000523511 FXYD6Q9H0Q3 95 aa12.5□□□□□ -0.41
LSM1-205ENST00000523511 CCDC59Q9P031 241 aaKnown RBP12.5□□□□□ -0.41
LSM1-205ENST00000523511 TRBV7-1A0A0A6YYK4 115 aa12.49□□□□□ -0.41
LSM1-205ENST00000523511 CD3DP04234 171 aa12.49□□□□□ -0.41
LSM1-205ENST00000523511 RPA2P15927 270 aa12.49□□□□□ -0.41
LSM1-205ENST00000523511 ZNF45Q02386 682 aa12.49□□□□□ -0.41
LSM1-205ENST00000523511 MEF2DQ14814 521 aa12.49□□□□□ -0.41
LSM1-205ENST00000523511 SPCS2Q15005 226 aa12.49□□□□□ -0.41
LSM1-205ENST00000523511 TBC1D26Q86UD7 250 aa12.49□□□□□ -0.41
LSM1-205ENST00000523511 OR1L6Q8NGR2 347 aa12.49□□□□□ -0.41
LSM1-205ENST00000523511 DIRAS2Q96HU8 199 aa12.49□□□□□ -0.41
LSM1-205ENST00000523511 SIGLEC8Q9NYZ4 499 aa12.49□□□□□ -0.41
LSM1-205ENST00000523511 LSM4Q9Y4Z0 139 aaKnown RBP12.49□□□□□ -0.41
LSM1-205ENST00000523511 E7EUB6 86 aa12.48□□□□□ -0.41
LSM1-205ENST00000523511 M0QYG6 137 aa12.48□□□□□ -0.41
LSM1-205ENST00000523511 CTDSP2O14595 271 aa12.48□□□□□ -0.41
LSM1-205ENST00000523511 RAB3DO95716 219 aa12.48□□□□□ -0.41
LSM1-205ENST00000523511 GP9P14770 177 aa12.48□□□□□ -0.41
LSM1-205ENST00000523511 AREGP15514 252 aa12.48□□□□□ -0.41
LSM1-205ENST00000523511 SPNP16150 400 aa12.48□□□□□ -0.41
LSM1-205ENST00000523511 IL18Q14116 193 aa12.48□□□□□ -0.41
LSM1-205ENST00000523511 FAM106AQ4KMX7 169 aa12.48□□□□□ -0.41
LSM1-205ENST00000523511 RNASE12Q5GAN4 147 aaKnown RBP12.48□□□□□ -0.41
LSM1-205ENST00000523511 H2BFWTQ7Z2G1 175 aa12.48□□□□□ -0.41
LSM1-205ENST00000523511 CCDC71LQ8N9Z2 235 aa12.48□□□□□ -0.41
LSM1-205ENST00000523511 OR5B3Q8NH48 314 aa12.48□□□□□ -0.41
LSM1-205ENST00000523511 OR4A16Q8NH70 328 aa12.48□□□□□ -0.41
LSM1-205ENST00000523511 TERB2Q8NHR7 220 aa12.48□□□□□ -0.41
LSM1-205ENST00000523511 RSL24D1Q9UHA3 163 aaKnown RBP12.48□□□□□ -0.41
LSM1-205ENST00000523511 OR51B2Q9Y5P1 312 aa12.48□□□□□ -0.41
LSM1-205ENST00000523511 TEX50A0A1B0GTY4 177 aa12.47□□□□□ -0.41
LSM1-205ENST00000523511 DISC1C4P0D8 188 aa12.47□□□□□ -0.41
LSM1-205ENST00000523511 B3GALNT1O75752 331 aa12.47□□□□□ -0.41
LSM1-205ENST00000523511 IGLV1-51P01701 117 aa12.47□□□□□ -0.41
LSM1-205ENST00000523511 PTBP1P26599 531 aaKnown RBP eCLIP12.47□□□□□ -0.418e-8■■■■■ 45.8
LSM1-205ENST00000523511 G6PCP35575 357 aa12.47□□□□□ -0.41
LSM1-205ENST00000523511 DEFA5Q01523 94 aa12.47□□□□□ -0.41
LSM1-205ENST00000523511 KLK9Q2XQG4 91 aa12.47□□□□□ -0.41
LSM1-205ENST00000523511 ZNF585BQ52M93 769 aa12.47□□□□□ -0.41
LSM1-205ENST00000523511 STEAP1BQ6NZ63 245 aa12.47□□□□□ -0.41
LSM1-205ENST00000523511 LAX1Q8IWV1 398 aa12.47□□□□□ -0.41
LSM1-205ENST00000523511 DYNC2LI1Q8TCX1 351 aa12.47□□□□□ -0.41
LSM1-205ENST00000523511 LSM10Q969L4 123 aaKnown RBP12.47□□□□□ -0.41
LSM1-205ENST00000523511 HINT2Q9BX68 163 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms